Difference between revisions of "WBConfCall 2022.03.03-Agenda and Minutes"
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*** Long time since it was run and had support | *** Long time since it was run and had support | ||
*** Sanger MySQL NS retired - decoupled as lots of false +ves generates tmp_Ids for manual review. | *** Sanger MySQL NS retired - decoupled as lots of false +ves generates tmp_Ids for manual review. | ||
| − | *** Transgene IDs - The data retrieval and processing broken | + | *** Transgene IDs - The data retrieval and processing broken : Caltech-side Curation write-up [https://wiki.wormbase.org/index.php/Transgenes#CGC_Transgenes_from_Strain_via_Hinxton here] |
*** Sanger->EBI - Infrastructure dependencies | *** Sanger->EBI - Infrastructure dependencies | ||
*** CGC_data format - subtle changes over time broke the parser | *** CGC_data format - subtle changes over time broke the parser | ||
Revision as of 16:25, 3 March 2022
Agenda
- Follow-up to BioCyc presentation
- From Peter K: "we would be open to discussing further with you the idea of inserting WormCyc pathway diagrams in Wormbase pages."
- Next steps?
- Helpdesk
- CGC data exchange revamp [Paul D]
- Issues/Fixes
- Long time since it was run and had support
- Sanger MySQL NS retired - decoupled as lots of false +ves generates tmp_Ids for manual review.
- Transgene IDs - The data retrieval and processing broken : Caltech-side Curation write-up here
- Sanger->EBI - Infrastructure dependencies
- CGC_data format - subtle changes over time broke the parser
- EBI->CalTech
- Start sending Transgene report
- Author info report.....what should we do with this?
- Issues/Fixes
- WS285 schema
- 2 changes:
- Wen - Expression_cluster tag for Single_Cell_RNASeq //Wen WS285 for CenGen data
- Daniela - Expression model tag removals
- Schedule:
- Models release Friday/Monday March 04/07
- Data freeze Monday March 28)
- Baer lab data ingest, possibly coming for WS285, ~1000 C. elegans spontaneous mutation accumulation (MA) lines
- Any other new data for WS285?
- 2 changes:
- WS284 news [Magz]
- 90 miRNA gene clusters from MirGeneDB - see issue #8466 for web-display
- AlphaFold links
