Difference between revisions of "WormBase SAB Meeting"
From WormBaseWiki
Jump to navigationJump to searchLine 63: | Line 63: | ||
* Literature curation introducton : Gary Schindelman (update on stats) - 5 minutes | * Literature curation introducton : Gary Schindelman (update on stats) - 5 minutes | ||
− | * Ontology Annotator | + | * Ontology Annotator |
+ | ** Juancarlos Chan - general introduction of OA | ||
+ | **Xiaodong Wang - developing interaction OA | ||
* Picture curation : Daniela Raciti - 10 minutes | * Picture curation : Daniela Raciti - 10 minutes |
Revision as of 16:54, 21 January 2011
WormBase Scientific Advisory Board Meeting
California Institute of Technology, February 3rd - 4th 2011
Contents
Wednesday 2nd Feb – Pre-Meeting (WormBase central)
(AB not required to attend this session)
6:30 – 18:00
Put right the World
DISCUSSION TOPICS
Sequence curation manual versus RNA-seq; how do we automate creation of new isoforms Handling EST-based and fragmented genomes GBrowse: making it -seq friendly Interaction browser: what shall we use? Resequencing a standard N2 isolate Chip-seq and other large datasets - where should the be stored to maximise usage but cut overhead? Minimum requirements for a genome to be allowed into WormBase - submission to EMBL/GenBank, gene prediction? Which genomes should be manually curated?
Thursday 3rd Feb – Millikan Board Room
9:00 - 12:00: Overview, Website, UI, Build, Orthology
- Introduction: Where we are; Hinxton Reorganization - (Paul Sternberg; 15 min)
- Slot for new Hinxton PIs (Paul Kersey and Matt Berriman; 30 mins)
- Build, database and related things - (Kevin Howe; 30 mins)
- User interface
- Site usage; introduction to the new site (Todd; 30 minutes)
- Tour of the new website (Abby; 30 minutes)
- Process and pathway curation and display
13:00 – 15:30 Sequence curation and analysis, other nematodes
- C. elegans(+ Tier II) Manual curation and projects? - Paul D. (20 mins)
- Large scale datasets (curation/modENCODE) - Gary W. (30 mins)
- Tier II genome (re)submissions -
- Other genome analysis -
15:30 - Literature Curation
- Literature curation introducton : Gary Schindelman (update on stats) - 5 minutes
- Ontology Annotator
- Juancarlos Chan - general introduction of OA
- Xiaodong Wang - developing interaction OA
- Picture curation : Daniela Raciti - 10 minutes
Possible topics:
- Gene Function Curation - concise descriptions (update on numbers, curation approach)
- Collaboration with other Databases/Projects - automation (ARRA), BioGRID, GO
- GSA Arun/Karen
General Discussion
- Coordination among sites
- Quality control
- Outreach
- Database migration community annotation
Friday 4th Feb – Millikan Board Room
8:30 – 9:00 Advisors breakfast
9:30 – 12:00 Advisors summary report
12:00 – 13:00 Lunch
13:00 – Discussion
(AB not required to attend this session)
Arrivals/Departures
Arrive
- Hinxton Crew - Pasadena Tuesday afternoon/evening?
Depart
- Hinxton Crew minus Michael - Pasadena Sunday before lunch?
- Michael P. - Pasadena Friday PM?