Difference between revisions of "WormBase SAB Meeting"
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== SAB Meeting 2011 == | == SAB Meeting 2011 == | ||
− | == | + | __TOC__ |
+ | <center><b> | ||
+ | <font size="5" color="Blue">SAB 2011 | ||
− | + | California Institute of Technology, February 3rd - 4th | |
+ | </font> | ||
+ | </b></center> | ||
+ | |||
+ | ==Wednesday 2nd Feb – Pre-Meeting== | ||
<b>(WormBase staff only)</b> | <b>(WormBase staff only)</b> | ||
Line 10: | Line 16: | ||
6:30 – 18:00 Put right the World | 6:30 – 18:00 Put right the World | ||
− | |||
− | 9:00 - 12:00: | + | ==Thursday 3rd Feb – Millikan Board Room== |
− | + | ||
− | + | <b>9:00 - 12:00:</b> | |
− | + | ||
− | + | * Introduction: Where we are; Hinxton Reorganization Paul Sternberg | |
+ | |||
+ | * Build Process (+ models?) - Kevin Howe | ||
+ | |||
+ | * Site usage; introduction to the new site (Todd; 30 minutes) | ||
+ | |||
+ | * Tour of the new website (Abby; 30 minutes) | ||
Line 32: | Line 43: | ||
BELOW IS still mostly 2008 SCHEDULE | BELOW IS still mostly 2008 SCHEDULE | ||
− | |||
− | + | <b>Morning: Website, UI, Build, Orthology</b> | |
− | + | ||
− | + | * Introduction: Hinxton Reorganization Paul Sternberg | |
− | + | ||
− | + | * New Website: | |
− | + | ||
+ | * Genome Browser: | ||
+ | |||
+ | * Build Process: | ||
+ | |||
+ | * Comparative Analysis: | ||
+ | |||
+ | * modENCODE & Chado migration | ||
+ | |||
+ | |||
+ | <b>13:00 – 15:30 Sequence curation and analysis, other nematodes</b> | ||
+ | |||
+ | * Introduction: John Spieth | ||
+ | |||
+ | * Curation Tool: Gary Williams | ||
+ | |||
+ | * Current methods and metrics: | ||
+ | |||
+ | * Briggsae curation and SNPS: | ||
+ | |||
+ | * Future curation: | ||
+ | |||
+ | |||
+ | <b>15:30 - Literature Curation</b> | ||
+ | |||
+ | * Textpresso-based Curation: Kimberly Van Auken | ||
+ | |||
+ | * Overview;Phenotype Curation: Gary Schindelman | ||
+ | |||
+ | * Generalizing Phenote: Juancarlos Chan | ||
+ | |||
+ | * Genetics: Mary Ann Tuli | ||
+ | |||
+ | * Cell-centric curation: Raymond Lee | ||
+ | |||
+ | * Gene Regulation: Xioadong Wang | ||
− | |||
− | + | <b>General Discussion</b> | |
− | |||
− | |||
− | |||
− | |||
− | + | * Coordination among sites | |
− | + | * Quality control | |
− | |||
− | |||
− | |||
− | |||
− | |||
− | + | * Outreach | |
− | + | * Database migration community annotation | |
− | |||
− | |||
− | |||
− | + | ==Friday 4th Feb== | |
8:30 – 9:00 Advisors breakfast | 8:30 – 9:00 Advisors breakfast |
Revision as of 12:09, 10 January 2011
2011 Scientific Advisory Board Meeting
SAB Meeting 2011
Contents
SAB 2011
California Institute of Technology, February 3rd - 4th
Wednesday 2nd Feb – Pre-Meeting
(WormBase staff only)
6:30 – 18:00 Put right the World
Thursday 3rd Feb – Millikan Board Room
9:00 - 12:00:
- Introduction: Where we are; Hinxton Reorganization Paul Sternberg
- Build Process (+ models?) - Kevin Howe
- Site usage; introduction to the new site (Todd; 30 minutes)
- Tour of the new website (Abby; 30 minutes)
Process and pathway curation and display
DISCUSSION TOPICS
Sequence curation manual versus RNA-seq; how do we automate creation of new isoforms Handling EST-based and fragmented genomes GBrowse: making it -seq friendly Interaction browser: what shall we use?
BELOW IS still mostly 2008 SCHEDULE
Morning: Website, UI, Build, Orthology
- Introduction: Hinxton Reorganization Paul Sternberg
- New Website:
- Genome Browser:
- Build Process:
- Comparative Analysis:
- modENCODE & Chado migration
13:00 – 15:30 Sequence curation and analysis, other nematodes
- Introduction: John Spieth
- Curation Tool: Gary Williams
- Current methods and metrics:
- Briggsae curation and SNPS:
- Future curation:
15:30 - Literature Curation
- Textpresso-based Curation: Kimberly Van Auken
- Overview;Phenotype Curation: Gary Schindelman
- Generalizing Phenote: Juancarlos Chan
- Genetics: Mary Ann Tuli
- Cell-centric curation: Raymond Lee
- Gene Regulation: Xioadong Wang
General Discussion
- Coordination among sites
- Quality control
- Outreach
- Database migration community annotation
Friday 4th Feb
8:30 – 9:00 Advisors breakfast
9:30 – 12:00 Advisors summary report
12:00 – 13:00 Lunch
13:00 – Discussion