Difference between revisions of "WormBase SAB Meeting"
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− | + | 9:00 - 12:00: | |
* Introduction: Where we are; Hinxton Reorganization Paul Sternberg | * Introduction: Where we are; Hinxton Reorganization Paul Sternberg | ||
* Build Process (+ models?) - Kevin Howe | * Build Process (+ models?) - Kevin Howe | ||
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* modENCODE & Chado migration (slides) | * modENCODE & Chado migration (slides) | ||
− | + | 13:00 – 15:30 Sequence curation and analysis, other nematodes | |
* Introduction: John Spieth (slides) | * Introduction: John Spieth (slides) | ||
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* Future curation: Anthony Rogers (slides) | * Future curation: Anthony Rogers (slides) | ||
− | + | 15:30 - Literature Curation | |
* Textpresso-based Curation: Kimberly Van Auken (slides) | * Textpresso-based Curation: Kimberly Van Auken (slides) | ||
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* Gene Regulation: Xioadong Wang (slides) | * Gene Regulation: Xioadong Wang (slides) | ||
− | + | General Discussion | |
* Coordination among sites | * Coordination among sites | ||
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* Database migration community annotation | * Database migration community annotation | ||
− | + | Friday 23rd May | |
8:30 – 9:00 Advisors breakfast | 8:30 – 9:00 Advisors breakfast |
Revision as of 11:52, 10 January 2011
2011 Scientific Advisory Board Meeting
SAB Meeting 2011
Headline text
California Institute of Technology, February 3-4, 2011
[edit] Wednesday 21st May – Pre-Meeting (WormBase staff only)
6:30 – 18:00 Put right the World [edit] Thursday 3rd May – Millikan Board Room
9:00 - 12:00:
* Introduction: Where we are; Hinxton Reorganization Paul Sternberg * Build Process (+ models?) - Kevin Howe * Site usage; introduction to the new site (Todd; 30 minutes) * Tour of the new website (Abby; 30 minutes)
Process and pathway curation and display
DISCUSSION TOPICS
Sequence curation manual versus RNA-seq; how do we automate creation of new isoforms Handling EST-based and fragmented genomes GBrowse: making it -seq friendly Interaction browser: what shall we use?
IBELOW IS stil mostly 2008 SCHEDULE
Website, UI, Build, Orthology
* Introduction: Hinxton Reorganization Paul Sternberg * New Website: Todd Harris (slides) * Genome Browser (slides) * Build Process: (slides) * Comparative Analysis: (slides) * modENCODE & Chado migration (slides)
13:00 – 15:30 Sequence curation and analysis, other nematodes
* Introduction: John Spieth (slides) * Curation Tool: Gary Williams (slides) * Current methods and metrics: Paul Davis (slides) * Briggsae curation and SNPS: Darin Blasiar (slides) * Future curation: Anthony Rogers (slides)
15:30 - Literature Curation
* Textpresso-based Curation: Kimberly Van Auken (slides) * Overview;Phenotype Curation: Gary Schindelman (slides) * Generalizing Phenote: Juancarlos Chan (slides) * Genetics: Mary Ann Tuli (slides) * Cell-centric curation: Raymond Lee (slides) * Gene Regulation: Xioadong Wang (slides)
General Discussion
* Coordination among sites * Quality control * Outreach * Database migration community annotation
Friday 23rd May
8:30 – 9:00 Advisors breakfast
9:30 – 12:00 Advisors summary report
12:00 – 13:00 Lunch
13:00 – Discussion