Difference between revisions of "Gene Interaction"
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[[File:Interaction_OA_tab1.jpg]] | [[File:Interaction_OA_tab1.jpg]] | ||
+ | |||
+ | * Tab 1 | ||
+ | **PGID | ||
+ | **Interaction ID//generate automatically per entry | ||
+ | **Non_directional //toggle on (default), off (color change by click) means effected/effector on. | ||
+ | **Interaction Type//dropdown list with 11 types showing in .ace template | ||
+ | **Effected Gene/Variation/Transgene//multiontology, corresponding to interactor in .ace file. order is not matter | ||
+ | **Effector Gene/Variation/Transgene//multiontology, corresponding to interactor in .ace file. order is not matter | ||
+ | <br> | ||
+ | |||
[[File:Interaction_OA_tab2.jpg]] | [[File:Interaction_OA_tab2.jpg]] | ||
− | + | *Tab 2 | |
+ | **Curator//dropdown list | ||
+ | **Paper//ontology | ||
+ | **RNAi ID//free text fiel | ||
+ | **Phenotype//multiontology | ||
+ | **Remark//big text | ||
+ | **Sentence ID//sentence shows in term info | ||
+ | **False Positive//toggle, will not give an id or no dump if the sentence is false positive, containing no interaction info | ||
+ | **next sentence button | ||
'''.ace template:''' | '''.ace template:''' |
Revision as of 18:45, 29 September 2010
==Gene_gene Interaction OA==
OA interface
- Tab 1
- PGID
- Interaction ID//generate automatically per entry
- Non_directional //toggle on (default), off (color change by click) means effected/effector on.
- Interaction Type//dropdown list with 11 types showing in .ace template
- Effected Gene/Variation/Transgene//multiontology, corresponding to interactor in .ace file. order is not matter
- Effector Gene/Variation/Transgene//multiontology, corresponding to interactor in .ace file. order is not matter
- Tab 2
- Curator//dropdown list
- Paper//ontology
- RNAi ID//free text fiel
- Phenotype//multiontology
- Remark//big text
- Sentence ID//sentence shows in term info
- False Positive//toggle, will not give an id or no dump if the sentence is false positive, containing no interaction info
- next sentence button
.ace template:
- Interaction : ""
- Interactor "WBGene" Variation ""
- Interactor "WBGene" Transgene ""
- Interactor "WBGene"
- Interaction_type Genetic Effector ""
- Interaction_type Genetic Effected ""
- Interaction_type Genetic Non_directional ""
- Interaction_type Genetic Interaction_RNAi ""
- Interaction_type Genetic Interaction_phenotype ""
- Interaction_type Regulatory Effector ""
- Interaction_type Regulatory Effected ""
- Interaction_type Regulatory Non_directional ""
- Interaction_type Regulatory Interaction_RNAi ""
- Interaction_type Regulatory Interaction_phenotype ""
- Interaction_type No_interaction Effector ""
- Interaction_type No_interaction Effected ""
- Interaction_type No_interaction Non_directional ""
- Interaction_type No_interaction Interaction_RNAi ""
- Interaction_type No_interaction Interaction_phenotype ""
- Interaction_type Predicted_interaction Non_directional ""
- Interaction_type Predicted_interaction Interaction_RNAi ""
- Interaction_type Predicted_interaction Interaction_phenotype ""
- Interaction_type Physical_interaction Effector ""
- Interaction_type Physical_interaction Effected ""
- Interaction_type Physical_interaction Interaction_RNAi ""
- Interaction_type Physical_interaction Interaction_phenotype ""
- Interaction_type Suppression Effector ""
- Interaction_type Suppression Effected ""
- Interaction_type Suppression Interaction_RNAi ""
- Interaction_type Suppression Interaction_phenotype ""
- Interaction_type Enhancement Effector ""
- Interaction_type Enhancement Effected ""
- Interaction_type Enhancement Interaction_RNAi ""
- Interaction_type Enhancement Interaction_phenotype ""
- Interaction_type Synthetic Non_directional ""
- Interaction_type Synthetic Interaction_RNAi ""
- Interaction_type Synthetic Interaction_phenotype ""
- Interaction_type Epistasis Effector ""
- Interaction_type Epistasis Effected ""
- Interaction_type Epistasis Interaction_RNAi ""
- Interaction_type Epistasis Interaction_phenotype ""
- Interaction_type Mutual_enhancement Non_directional ""
- Interaction_type Mutual_enhancement Interaction_RNAi ""
- Interaction_type Mutual_enhancement Interaction_phenotype ""
- Interaction_type Mutual_suppression Non_directional ""
- Interaction_type Mutual_suppression Interaction_RNAi ""
- Interaction_type Mutual_suppression Interaction_phenotype ""
- Paper ""
- Remark ""
== Some Notes for gene_gene_interaction ==
- two large scale papers
- WBPaper00027155 (Weiwei's science paper) has 23128 objects, starting from WBInteraction0008637 and ending at WBInteraction0050578 (blank ids in between)
- WBPaper00031465 (Lee's Nature Genetics paper) has 375491 objects, starting from WBInteraction 0100001, ending at WBInteraction047451 (which is the largest WBInteraction id in acedb)