Difference between revisions of "Species available through WormBase (overview)"
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|[[Caenorhabditis japonica|''Caenorhabditis japonica'']] | |[[Caenorhabditis japonica|''Caenorhabditis japonica'']] | ||
− | | [http:// | + | | [http://dev.wormbase.org/db/gb2/gbrowse/c_japonica yes] <br>- includes nGASP predictions <br>- bug: when click 'update image' all toggle buttons disappear, this happens with other species too |
| genomic | | genomic | ||
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− | | [http:// | + | | [http://dev.wormbase.org/db/gene/gene?name=WBGene00134647 Gene Summary] |
− | | [http:// | + | | [http://dev.wormbase.org/db/seq/sequence?name=CJA15443;class=Gene_name Sequence Summary] |
− | | [http:// | + | | [http://dev.wormbase.org/db/seq/protein?name=JA%3AJA24090;class=Protein Protein Summary] |
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Revision as of 12:50, 5 January 2010
Species | Genome Browser |
BLAST | BLAT | Genes | Sequences | Proteins | Orthology |
Brugia malayi | yes -missing name data for gene models -gene page available for brigpep, remaneiX, and wormpep protein match features |
BLAST Search genomic, proteins |
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Caenorhabditis elegans | yes | BLAST Search genes, proteins, ests, genomic |
BLAT Search | Gene Summary | Sequence Summary | Protein Summary | |
Caenorhabditis brenneri | genomic, proteins | ||||||
Caenorhabditis briggsae | Yes - includes nGASP predictions | genes, proteins, ests, genomic | genomic | ||||
Caenorhabditis japonica | yes - includes nGASP predictions - bug: when click 'update image' all toggle buttons disappear, this happens with other species too |
genomic | Gene Summary | Sequence Summary | Protein Summary | ||
Caenorhabditis remanei | [1] - includes nGASP predictions |
genomic, proteins | Gene Summary | Sequence Summary -error probably with inline image issue, shows up right in dev |
Protein Summary | ||
Haemonchus contortus | |||||||
Meloidogyne hapla | genomic | ||||||
Meloidogyne incognita | |||||||
Pristionchus pacificus | genomic, proteins | ||||||