Difference between revisions of "WBConfCall 2020.04.16-Agenda and Minutes"
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== Reproducing or reworking the "protein schematic" in protein pages == | == Reproducing or reworking the "protein schematic" in protein pages == | ||
| − | As we winnow down the number of items at WormBase.org that directly depend on ACEDB (and there are very few left), we have the graphic generated for protein homology like in the [https://wormbase.org/species/c_elegans/protein/CE28239#3--10 UNC-26, isoform a page] While we can reproduce that image with JBrowse like [http://dev.wormbase.org:9018/?loc=JC8.10a%3A1..1113&tracks=Exon%20boundaries%2CFeatures-seg%2CMotifs%2CSelected%20BLASTP%20Homologies this], it does require jumping through some hoops. So the question is, do we keep this functionality and jump through those hoops, or should we rework it to be more useful, or do we pitch it altogether? | + | As we winnow down the number of items at WormBase.org that directly depend on ACEDB (and there are very few left), we have the graphic generated for protein homology like in the [https://wormbase.org/species/c_elegans/protein/CE28239#3--10 UNC-26, isoform a page] While we can reproduce that image with JBrowse like [http://dev.wormbase.org:9018/?loc=JC8.10a%3A1..1113&tracks=Exon%20boundaries%2CFeatures-seg%2CMotifs%2CSelected%20BLASTP%20Homologies this], it does require jumping through some hoops. So the question is, do we keep this functionality and jump through those hoops, or should we rework it to be more useful, or do we pitch it altogether? - It is very useful. Should keep this. |
== Calculating potential interologs based on Alliance orthology == | == Calculating potential interologs based on Alliance orthology == | ||
Revision as of 17:31, 16 April 2020
Contents
Agenda and Minutes
Reproducing or reworking the "protein schematic" in protein pages
As we winnow down the number of items at WormBase.org that directly depend on ACEDB (and there are very few left), we have the graphic generated for protein homology like in the UNC-26, isoform a page While we can reproduce that image with JBrowse like this, it does require jumping through some hoops. So the question is, do we keep this functionality and jump through those hoops, or should we rework it to be more useful, or do we pitch it altogether? - It is very useful. Should keep this.
Calculating potential interologs based on Alliance orthology
- Predicted Protein-Protein interactions from multiple species' orthology data in AGR
- Need to do minor model change for WS277 or WS278
- Hosting data at AceDB and automatic update from AGR update
GO-CAM model/pathway curation with orthology data
Help-desk issue
- Looking for AVB-specific promoter of C. Elegans (github #7667)
- FTP site search for basement membrane related genes/proteins
- REST API issues
