Difference between revisions of "2018 Advisory Board Meeting"
From WormBaseWiki
Jump to navigationJump to search (→Agenda) |
|||
Line 21: | Line 21: | ||
== Agenda == | == Agenda == | ||
− | + | === Lightning talks === | |
+ | |||
--5 minutes pe peson with 5 mintues discussion | --5 minutes pe peson with 5 mintues discussion | ||
10 x 24 = 4 hours | 10 x 24 = 4 hours | ||
− | + | ||
− | + | * Paul Davis - ''CGC, Variants and Strains'' | |
− | + | * Kevin Howe - | |
− | * Kevin Howe | + | * Michael Paulini - ''Parasitic core species'' or ''WormBase@UCSC'' |
− | * Michael Paulini - '' | + | * Faye Rodgers - ''Community annotation of gene structures'' |
− | * | + | * Matt Russell - ''Using Datomic for curation data capture (Name server project)'' |
* Gary Williams - ''Gene curation; evidence for gene structures; tools for curation'' | * Gary Williams - ''Gene curation; evidence for gene structures; tools for curation'' | ||
− | + | * Chris Grove - ''Phenotype curation & community phenotype curation, interactions (genetic & physical)'' | |
− | + | * Kimberly Van Auken - ''gene function annotation using GO'' | |
− | |||
− | * Chris Grove - | ||
− | * Kimberly Van Auken - gene function annotation using GO | ||
* Raymond Lee | * Raymond Lee | ||
− | * Karen Yook '' | + | * Karen Yook ''making more use of microPublication'' |
* Wen Chen | * Wen Chen | ||
− | * April Jauhal -- | + | * April Jauhal -- ''Gene regulation interactions'' |
− | * Ranjana Kishore - Automated gene descriptions and disease models | + | * Ranjana Kishore - ''Automated gene descriptions and disease models'' |
* Juancarlos Chan | * Juancarlos Chan | ||
• Paul Sternberg ''Transcriptional Regulation, what we need to do'' | • Paul Sternberg ''Transcriptional Regulation, what we need to do'' | ||
Line 46: | Line 44: | ||
* Adam Wright | * Adam Wright | ||
* Paulo Nuin | * Paulo Nuin | ||
− | * Sibyl Gao -- Technology stack modernization for UI and search, Name server UI | + | * Sibyl Gao -- ''Technology stack modernization for UI and search, Name server UI'' |
+ | |||
+ | === Discussion session === | ||
+ | |||
+ | * Database migration project | ||
+ | ** Datomic migration status | ||
+ | ** How can we dove-talking with the Alliance infrastructure work? | ||
+ | ** Plans for using Datomic in curation(?) | ||
− | + | * What processes/tools should we centralise in the Alliance? | |
− | + | ** Curation tools? | |
+ | ** WormMine? | ||
− | |||
= Thursday dinner for staff and SAB member = | = Thursday dinner for staff and SAB member = |
Revision as of 10:30, 25 June 2018
The 2018 edition of the WormBase project meeting / Scientific Advisory Board meeting will take place at OICR on 12/13 July 2018.
Contents
Logistics
Attending
- Hinxton
- Matt Berriman, Kevin Howe, Michael Paulini, Paul Davis, Gary Williams, Matt Russell, Faye Rodgers
- Caltech
- Chris Grove, Kimberly Van Auken, Raymond Lee, Karen Yook, Paul Sternberg, Wen Chen, April Jauhal, Ranjana Kishore, Juancarlos Chan
- OICR
- Lincoln Stein, Todd Harris, Adam Wright, Paulo Nuin, Sibyl Gao
Presentation slides, drafts, etc
- https://drive.google.com/drive/folders/161gEkCTxIAy22iVm1gRWmhYu_yhavMf6
- Login with WormBase account to edit.
Project meeting
Agenda
Lightning talks
--5 minutes pe peson with 5 mintues discussion 10 x 24 = 4 hours
- Paul Davis - CGC, Variants and Strains
- Kevin Howe -
- Michael Paulini - Parasitic core species or WormBase@UCSC
- Faye Rodgers - Community annotation of gene structures
- Matt Russell - Using Datomic for curation data capture (Name server project)
- Gary Williams - Gene curation; evidence for gene structures; tools for curation
- Chris Grove - Phenotype curation & community phenotype curation, interactions (genetic & physical)
- Kimberly Van Auken - gene function annotation using GO
- Raymond Lee
- Karen Yook making more use of microPublication
- Wen Chen
- April Jauhal -- Gene regulation interactions
- Ranjana Kishore - Automated gene descriptions and disease models
- Juancarlos Chan
• Paul Sternberg Transcriptional Regulation, what we need to do
- Todd Harris -- website status; use and users; associated costs and management; third party projects we support
- Adam Wright
- Paulo Nuin
- Sibyl Gao -- Technology stack modernization for UI and search, Name server UI
Discussion session
- Database migration project
- Datomic migration status
- How can we dove-talking with the Alliance infrastructure work?
- Plans for using Datomic in curation(?)
- What processes/tools should we centralise in the Alliance?
- Curation tools?
- WormMine?
Thursday dinner for staff and SAB member
Evening, Thursday July 12
SAB
Advisors
attending
- Valerie Wood - PomBase
- Mary Shimoyama - RGD
- Ann Rougvie
- Brian Oliver
- Gary Bader
- Brent Derry
- Mei Zhen
regrets
- Oliver Hobert
- Julie Ahringer
- Andrew Chisholm
- Mike Cherry
- John Calarco
Agenda
0800 coffee???
0830 introduction and overview -Paul Sternberg
Overview of Project, Funding, The Alliance, Big Picture, Issues, Outreach,
0900 dataflow and backend: status and plans -Kevin Howe
Status
0945 curation: status and plans -Chris Grove
Prioritization of datatypes How this is impacted by Alliance
1030 break
1100 website: status and plans - Todd Harris
DevOps Tools Running on datomic
1130 tools and displays;status and plans
WormMine - Ontology Browsing -Raymond ParaSite - Kevin Howe
1200 lunch
1300 SAB discussion
1430 Feedback, and Discussion
1630 conclude
Dinner for those who are not departing immediately
Evening, Friday, July 13