Difference between revisions of "WS248 Models.wrm"
(Created page with "__TOC__ == GO_annotation class == Simplified the model to that originally incorporated into the WS247 schema. This class captures Gene::GO associateions and additional meta...") |
|||
Line 79: | Line 79: | ||
With all gene references moving from the ?Transgene model to the | With all gene references moving from the ?Transgene model to the | ||
?Construct model, this tag is no longer needed. | ?Construct model, this tag is no longer needed. | ||
+ | |||
+ | == ?Picture :: ?Life_stage == | ||
+ | |||
+ | Add Depict tag to the ?Picture class | ||
+ | |||
+ | Life_stage ?Life_stage XREF Picture | ||
+ | |||
+ | == ?Construct == | ||
+ | |||
+ | Remove Type_of_construct sub tags as a controlled vocabulary is now imposed in the curation tool | ||
+ | |||
+ | Type_of_construct ?Text |
Latest revision as of 16:15, 19 February 2015
Contents
GO_annotation class
Simplified the model to that originally incorporated into the WS247 schema. This class captures Gene::GO associateions and additional meta data associated with a curation event
?GO_annotation Gene ?Gene XREF GO_annotation GO_term ?GO_term XREF GO_annotation GO_code ?GO_code Annotation_relation NOT colocalizes_with contributes_to enables involved_in part_of Annotation_made_with Interacting_gene ?Gene Inferred_from_GO_term ?GO_term Motif ?Motif RNAi_result ?RNAi Variation ?Variation Phenotype ?Phenotype Database ?Database ?Database_field ?Text Annotation_extension Life_stage_relation ?Text UNIQUE ?Life_stage Gene_relation ?Text UNIQUE ?Gene Molecule_relation ?Text UNIQUE ?Molecule Anatomy_relation ?Text UNIQUE ?Anatomy_term GO_term_relation ?Text UNIQUE ?GO_term Annotation_isoform ?Text ?Protein Interacting_species ?Species ?Strain Reference ?Paper XREF GO_annotation GO_reference ?Database ?Database_field ?Text Contributed_by ?Analysis Date_last_updated UNIQUE DateType
Analysis Class Modification
?Analysis Project ?Analysis XREF Subproject
Removal of the Unique tag to allow for multiple Sub Projects
Gene::Picture class connection
Depict Gene ?Gene XREF Picture
?Interactor_info, and ?Transgene models
?Interaction model changes:
1) Create a "Variation_interactor" tag under "Interactor":
?Interaction Interactor Variation_interactor ?Variation XREF Interactor #Interactor_info
The addition of variations as an interactor type will require a post-variation-to-gene-mapping (during build) population of "Interactor_overlapping_gene" tags. I've corresponded with Kevin and Mary Ann about this separately.
2) Remove the "Deviation_from_expectation" and "Neutrality_function" tags
These tags are not being used and I don't think they will be.
?Interactor_info model changes:
1) Remove the "Variation", "Intragenic_effector_variation", and "Intragenic_affected_variation" tags
?Transgene model change:
1) Remove the "Historical_gene" tag
With all gene references moving from the ?Transgene model to the ?Construct model, this tag is no longer needed.
?Picture :: ?Life_stage
Add Depict tag to the ?Picture class
Life_stage ?Life_stage XREF Picture
?Construct
Remove Type_of_construct sub tags as a controlled vocabulary is now imposed in the curation tool
Type_of_construct ?Text