Difference between revisions of "2014 Advisory Board Meeting"
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===Advisors=== | ===Advisors=== | ||
− | * [http://www.gurdon.cam.ac.uk/~ahringerlab/ Julie Ahringer] | + | * [http://www.gurdon.cam.ac.uk/~ahringerlab/ Julie Ahringer] (present only after 2pm on Monday 6th) |
* [http://www2.mrc-lmb.cam.ac.uk/group-leaders/a-to-g/mario-de-bono Mario de Bono] | * [http://www2.mrc-lmb.cam.ac.uk/group-leaders/a-to-g/mario-de-bono Mario de Bono] | ||
* [http://www.gen.cam.ac.uk/directory/nick-brown Nick Brown] | * [http://www.gen.cam.ac.uk/directory/nick-brown Nick Brown] | ||
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* [http://www.eb.tuebingen.mpg.de/research/departments/evolutionary-biology.html Ralf Sommer] | * [http://www.eb.tuebingen.mpg.de/research/departments/evolutionary-biology.html Ralf Sommer] | ||
* [http://www.sysbiol.cam.ac.uk/Investigators/val-wood Val Wood] | * [http://www.sysbiol.cam.ac.uk/Investigators/val-wood Val Wood] | ||
− | * [http://www.ebi.ac.uk/about/people/ewan-birney Ewan Birney] | + | * [http://www.ebi.ac.uk/about/people/ewan-birney Ewan Birney] (present only 11am-2pm on Monday 6th) |
* [http://www.genome.gov/27545578 Peter Good] | * [http://www.genome.gov/27545578 Peter Good] | ||
* Brian Brunk | * Brian Brunk | ||
− | + | * [http://maizelsgroup.biology.ed.ac.uk Rick Maizels] | |
===Dates and Location=== | ===Dates and Location=== | ||
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* Sunday 5th October PM: Consortium meeting, EBI (advisors not present) | * Sunday 5th October PM: Consortium meeting, EBI (advisors not present) | ||
* Monday 6th October: whole-group advisory board meeting (talks and discussion), EBI | * Monday 6th October: whole-group advisory board meeting (talks and discussion), EBI | ||
− | * Tuesday 7th October: AM - advisors report back | + | * Tuesday 7th October: AM - advisors report back and discussion |
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− | + | === Accommodation === | |
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+ | For those staying on campus at the conference centre: | ||
− | * | + | * Booking reference for Rick Maizels: 5714 |
− | * | + | * Booking reference for everyone else: 4483 |
− | * | + | * Check in is from 2pm on the day of arrival and check out at 10am on the day of departure. Breakfast is included and is served from 07:30-09:00 on weekdays, 07.00-10.00 at weekends. |
− | + | * Please contact the conference centre directly on +44 (0) 1223 495000 with questions/changes changes quoting the reference number above. | |
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− | * | ||
+ | = Agenda = | ||
− | + | === Sunday 5th October === | |
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+ | * 13.00 consortium meeting | ||
+ | ** working groups: | ||
+ | *** database migration | ||
+ | *** phenologs: curating phenotypes/variation for better comparability with human disease gene function | ||
+ | *** RNAi mapping (review of mapping pipeline and extension to other species) | ||
+ | ** group discussions | ||
+ | *** website and user experience | ||
+ | *** ParaSite and integration with WormBase central. | ||
+ | * 18:00(ish) - dinner + drinks (in Cambridge?) | ||
− | + | === Monday 6th October === | |
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− | + | * 09.15 Introduction/Vision/Issues - Paul Sternberg | |
+ | * 09.30 Genome annotation and production informatics | ||
+ | ** 09.30 Overview of database production - Kevin Howe | ||
+ | ** 09.45 Caenorhabditis sequence curation - Gary Williams | ||
+ | ** 10.00 Nematode ncRNA annotation - Paul Davis | ||
+ | ** 10.15 Curation of regulatory sequence features in C.elegans - Mary Ann Tuli | ||
+ | ** 10.30 Parasitic nematode gene model curation - Michael Paulini | ||
+ | ** 10.45 WormBase ParaSite - Kevin Howe | ||
+ | * 11:00 BREAK | ||
+ | * 11:30 Database migration project | ||
+ | ** 11.30 Introduction and motivation - Kevin Howe / Todd Harris | ||
+ | ** 11.45 Technology investigation: progress report - Thomas Down | ||
+ | ** 12.00 An overview of EuPathDB infrastructure and production informatics - Brian Brunk | ||
+ | * 12.30 Lunch | ||
+ | * 14.00 Web-site | ||
+ | ** 14:00 Usage, user community, leveraging the cloud, new features - Todd Harris | ||
+ | * 14:45 Curation of gene function | ||
+ | ** 14:45 Overview - Chris Grove | ||
+ | ** 15.00 Process / Topic curation - Karen Yook | ||
+ | ** 15.15 GO curation and modeling - Kimberly van Auken | ||
+ | ** 15.30 Worm models of human disease - Ranjana Kishore | ||
+ | * 15.45 BREAK | ||
+ | * 16.15 Curation of gene function (continued) | ||
+ | ** 16.15 CANTO - Val Wood | ||
+ | ** 16.30 Gene expression - Wen Chen | ||
+ | ** 16.45 Ontology browser and use - Raymond Lee | ||
+ | ** 17.00 Nomenclature update - Mary Ann Tuli | ||
− | * | + | * 19:00 Dinner at Hinxton Red Lion |
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− | + | === Tuesday 7th October === | |
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− | * | + | * 09.00 Advisors meet |
− | + | * 10.00 Advisors report back / further discussion | |
− | * | + | * 12.30 Lunch / Close |
− | * |
Latest revision as of 07:19, 6 October 2014
Contents
Logistics
Advisors
- Julie Ahringer (present only after 2pm on Monday 6th)
- Mario de Bono
- Nick Brown
- Jonathan Ewbank
- Ralf Sommer
- Val Wood
- Ewan Birney (present only 11am-2pm on Monday 6th)
- Peter Good
- Brian Brunk
- Rick Maizels
Dates and Location
- EBI, Hinxton, UK
- Sunday 5th October PM: Consortium meeting, EBI (advisors not present)
- Monday 6th October: whole-group advisory board meeting (talks and discussion), EBI
- Tuesday 7th October: AM - advisors report back and discussion
Accommodation
For those staying on campus at the conference centre:
- Booking reference for Rick Maizels: 5714
- Booking reference for everyone else: 4483
- Check in is from 2pm on the day of arrival and check out at 10am on the day of departure. Breakfast is included and is served from 07:30-09:00 on weekdays, 07.00-10.00 at weekends.
- Please contact the conference centre directly on +44 (0) 1223 495000 with questions/changes changes quoting the reference number above.
Agenda
Sunday 5th October
- 13.00 consortium meeting
- working groups:
- database migration
- phenologs: curating phenotypes/variation for better comparability with human disease gene function
- RNAi mapping (review of mapping pipeline and extension to other species)
- group discussions
- website and user experience
- ParaSite and integration with WormBase central.
- working groups:
- 18:00(ish) - dinner + drinks (in Cambridge?)
Monday 6th October
- 09.15 Introduction/Vision/Issues - Paul Sternberg
- 09.30 Genome annotation and production informatics
- 09.30 Overview of database production - Kevin Howe
- 09.45 Caenorhabditis sequence curation - Gary Williams
- 10.00 Nematode ncRNA annotation - Paul Davis
- 10.15 Curation of regulatory sequence features in C.elegans - Mary Ann Tuli
- 10.30 Parasitic nematode gene model curation - Michael Paulini
- 10.45 WormBase ParaSite - Kevin Howe
- 11:00 BREAK
- 11:30 Database migration project
- 11.30 Introduction and motivation - Kevin Howe / Todd Harris
- 11.45 Technology investigation: progress report - Thomas Down
- 12.00 An overview of EuPathDB infrastructure and production informatics - Brian Brunk
- 12.30 Lunch
- 14.00 Web-site
- 14:00 Usage, user community, leveraging the cloud, new features - Todd Harris
- 14:45 Curation of gene function
- 14:45 Overview - Chris Grove
- 15.00 Process / Topic curation - Karen Yook
- 15.15 GO curation and modeling - Kimberly van Auken
- 15.30 Worm models of human disease - Ranjana Kishore
- 15.45 BREAK
- 16.15 Curation of gene function (continued)
- 16.15 CANTO - Val Wood
- 16.30 Gene expression - Wen Chen
- 16.45 Ontology browser and use - Raymond Lee
- 17.00 Nomenclature update - Mary Ann Tuli
- 19:00 Dinner at Hinxton Red Lion
Tuesday 7th October
- 09.00 Advisors meet
- 10.00 Advisors report back / further discussion
- 12.30 Lunch / Close