Difference between revisions of "Migration"
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Jump to navigationJump to search| (8 intermediate revisions by one other user not shown) | |||
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| − | + | tester / gbrowse compliance / which production node it has been tested on | |
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| − | + | todd / gb1 & gb2 / freeze1 | |
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| − | + | Tested by todd, gb1 and gb2 compliant, tested on freeze1 | |
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| + | <pre> | ||
./cell: | ./cell: | ||
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-rwxrwxr-x 1 todd wormbase 20053 Jul 6 14:06 cell.cgi | -rwxrwxr-x 1 todd wormbase 20053 Jul 6 14:06 cell.cgi | ||
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-rwxrwxr-x 1 todd wormbase 3916 Jul 6 14:06 make_pedigree.cgi | -rwxrwxr-x 1 todd wormbase 3916 Jul 6 14:06 make_pedigree.cgi | ||
-rwxrwxr-x 1 todd wormbase 253 Jul 6 14:06 mindofworm | -rwxrwxr-x 1 todd wormbase 253 Jul 6 14:06 mindofworm | ||
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drwxrwsr-x 4 todd wormbase 4096 Jul 6 14:06 neuron | drwxrwsr-x 4 todd wormbase 4096 Jul 6 14:06 neuron | ||
-rwxrwxr-x 1 todd wormbase 4042 Jul 6 14:06 neuron.cgi | -rwxrwxr-x 1 todd wormbase 4042 Jul 6 14:06 neuron.cgi | ||
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-rw-rw-r-- 1 todd wormbase 1318 Jul 6 14:06 Pedigree.pm | -rw-rw-r-- 1 todd wormbase 1318 Jul 6 14:06 Pedigree.pm | ||
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./cell/neuron: | ./cell/neuron: | ||
total 336 | total 336 | ||
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-rwxrwxr-x 1 todd wormbase 1876 Jul 6 14:06 dot2png.cgi | -rwxrwxr-x 1 todd wormbase 1876 Jul 6 14:06 dot2png.cgi | ||
drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 img | drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 img | ||
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-rwxrwxr-x 1 todd wormbase 3726 Jul 6 14:06 neuron.cgi | -rwxrwxr-x 1 todd wormbase 3726 Jul 6 14:06 neuron.cgi | ||
-rwxrwxr-x 1 todd wormbase 3419 Jul 6 14:06 neuron_png.pl | -rwxrwxr-x 1 todd wormbase 3419 Jul 6 14:06 neuron_png.pl | ||
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-rwxrwxr-x 1 todd wormbase 2108 Jul 6 14:06 plain2png.pl | -rwxrwxr-x 1 todd wormbase 2108 Jul 6 14:06 plain2png.pl | ||
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./curate: | ./curate: | ||
total 28 | total 28 | ||
-rwxrwxr-x 1 todd wormbase 6812 Jul 6 14:07 base | -rwxrwxr-x 1 todd wormbase 6812 Jul 6 14:07 base | ||
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-rwxrwxr-x 1 todd wormbase 3865 Jul 6 14:07 online_forms | -rwxrwxr-x 1 todd wormbase 3865 Jul 6 14:07 online_forms | ||
-rwxrwxr-x 1 todd wormbase 8474 Jul 6 14:07 submit | -rwxrwxr-x 1 todd wormbase 8474 Jul 6 14:07 submit | ||
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./gene: | ./gene: | ||
total 932 | total 932 | ||
| − | -rwxrwxr-x 1 todd wormbase 50302 Jul 6 14:07 allele | + | -rwxrwxr-x 1 todd wormbase 50302 Jul 6 14:07 allele DEPRECATED |
| − | -rwxrwxr-x 1 todd wormbase 4767 Jul 6 14:07 antibody | + | -rwxrwxr-x 1 todd wormbase 4767 Jul 6 14:07 antibody todd / gb1 & gb2 / freeze1 |
| − | + | -rwxrwxr-x 1 todd wormbase 22832 Jul 6 14:07 expression todd / not tested yet in production | |
| − | -rwxrwxr-x 1 todd wormbase 22832 Jul 6 14:07 expression | + | -rwxrwxr-x 1 todd wormbase 6467 Jul 6 14:07 expr_profile todd / not tested yet in production |
| − | + | -rwxrwxr-x 1 todd wormbase 140250 Jul 13 13:14 gene todd / not tested yet in production | |
| − | + | -rwxrwxr-x 1 todd wormbase 4397 Jul 6 14:07 geneapplet DEPRECATED | |
| − | + | -rwxrwxr-x 1 todd wormbase 7058 Jul 6 14:07 gene_class todd / gb1 & gb2 / freeze1 | |
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| − | -rwxrwxr-x 1 todd wormbase 6467 Jul 6 14:07 expr_profile | ||
| − | -rwxrwxr-x 1 todd wormbase 140250 Jul 13 13:14 gene | ||
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| − | -rwxrwxr-x 1 todd wormbase 4397 Jul 6 14:07 geneapplet | ||
| − | -rwxrwxr-x 1 todd wormbase 7058 Jul 6 14:07 gene_class | ||
-rwxrwxr-x 1 todd wormbase 1682 Jul 6 14:07 gene_in_profile | -rwxrwxr-x 1 todd wormbase 1682 Jul 6 14:07 gene_in_profile | ||
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-rwxrwxr-x 1 todd wormbase 4466 Jul 6 14:07 genetable | -rwxrwxr-x 1 todd wormbase 4466 Jul 6 14:07 genetable | ||
-rwxrwxr-x 1 todd wormbase 14333 Jul 6 14:07 gmap | -rwxrwxr-x 1 todd wormbase 14333 Jul 6 14:07 gmap | ||
| Line 146: | Line 49: | ||
-rwxrwxr-x 1 todd wormbase 23764 Jul 6 14:07 interaction | -rwxrwxr-x 1 todd wormbase 23764 Jul 6 14:07 interaction | ||
-rwxrwxr-x 1 todd wormbase 2305 Jul 6 14:07 interaction_details | -rwxrwxr-x 1 todd wormbase 2305 Jul 6 14:07 interaction_details | ||
| − | -rwxrwxr-x 1 todd wormbase 11293 Jul 6 14:07 locus | + | -rwxrwxr-x 1 todd wormbase 11293 Jul 6 14:07 locus BROKEN |
-rwxrwxr-x 1 todd wormbase 4477 Jul 6 14:07 mapping_data | -rwxrwxr-x 1 todd wormbase 4477 Jul 6 14:07 mapping_data | ||
| − | -rwxrwxr-x 1 todd wormbase 3353 Jul 6 14:07 motif | + | -rwxrwxr-x 1 todd wormbase 3353 Jul 6 14:07 motif todd / gb1 & gb2 / freeze1 |
-rw-rw-r-- 1 todd wormbase 23335 Jul 6 14:07 mountains_coords.txt | -rw-rw-r-- 1 todd wormbase 23335 Jul 6 14:07 mountains_coords.txt | ||
| − | -rwxrwxr-x 1 todd wormbase 3088 Jul 6 14:07 operon | + | -rwxrwxr-x 1 todd wormbase 3088 Jul 6 14:07 operon todd / gb1 & gb2 / freeze1 |
| − | -rwxrwxr-x 1 todd wormbase 29456 Jul 6 14:07 rearrange | + | -rwxrwxr-x 1 todd wormbase 29456 Jul 6 14:07 rearrange todd / not tested yet in production |
| − | -rwxrwxr-x 1 todd wormbase 5440 Jul 6 14:07 regulation | + | -rwxrwxr-x 1 todd wormbase 5440 Jul 6 14:07 regulation todd / gb1 & gb2 / freeze1 |
drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:07 sk_map | drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:07 sk_map | ||
| − | -rwxrwxr-x 1 todd wormbase 12043 Jul 6 14:07 strain | + | -rwxrwxr-x 1 todd wormbase 12043 Jul 6 14:07 strain todd / gb1 & gb2 / freeze1 |
-rwxrwxr-x 1 todd wormbase 5348 Jul 6 14:07 structure_data | -rwxrwxr-x 1 todd wormbase 5348 Jul 6 14:07 structure_data | ||
| − | -rwxrwxr-x 1 todd wormbase 5308 Jul 6 14:07 transgene | + | -rwxrwxr-x 1 todd wormbase 5308 Jul 6 14:07 transgene todd / not tested yet in production |
-rwxrwxr-x 1 todd wormbase 6108 Jul 6 14:07 transgene_tbls | -rwxrwxr-x 1 todd wormbase 6108 Jul 6 14:07 transgene_tbls | ||
-rwxrwxr-x 1 todd wormbase 92220 Jul 6 14:07 variation | -rwxrwxr-x 1 todd wormbase 92220 Jul 6 14:07 variation | ||
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./generic: | ./generic: | ||
total 16 | total 16 | ||
-rwxrwxr-x 1 todd wormbase 1237 Jul 6 14:06 acetable | -rwxrwxr-x 1 todd wormbase 1237 Jul 6 14:06 acetable | ||
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-rw-rw-r-- 1 todd wormbase 1380 Jul 6 14:06 report | -rw-rw-r-- 1 todd wormbase 1380 Jul 6 14:06 report | ||
-rwxrwxr-x 1 todd wormbase 3945 Jul 6 14:06 tree | -rwxrwxr-x 1 todd wormbase 3945 Jul 6 14:06 tree | ||
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./lib: | ./lib: | ||
| Line 219: | Line 74: | ||
drwxrwsr-x 4 todd wormbase 4096 Jul 6 14:07 CSS | drwxrwsr-x 4 todd wormbase 4096 Jul 6 14:07 CSS | ||
-rwxrwxr-x 1 todd wormbase 6580 Jul 6 14:06 CSS.pm | -rwxrwxr-x 1 todd wormbase 6580 Jul 6 14:06 CSS.pm | ||
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-rw-rw-r-- 1 todd wormbase 1337 Jul 6 14:06 develSubs.pm | -rw-rw-r-- 1 todd wormbase 1337 Jul 6 14:06 develSubs.pm | ||
-rw-rw-r-- 1 todd wormbase 1314 Jul 6 14:06 ElegansOligos.pm | -rw-rw-r-- 1 todd wormbase 1314 Jul 6 14:06 ElegansOligos.pm | ||
-rw-rw-r-- 1 todd wormbase 130862 Jul 9 12:33 ElegansSubs.pm | -rw-rw-r-- 1 todd wormbase 130862 Jul 9 12:33 ElegansSubs.pm | ||
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-rw-rw-r-- 1 todd wormbase 38711 Jul 6 14:06 GBsyn.pm | -rw-rw-r-- 1 todd wormbase 38711 Jul 6 14:06 GBsyn.pm | ||
-rw-rw-r-- 1 todd wormbase 5780 Jul 6 14:06 MerlynAO.pm | -rw-rw-r-- 1 todd wormbase 5780 Jul 6 14:06 MerlynAO.pm | ||
| Line 239: | Line 91: | ||
drwxrwsr-x 4 todd wormbase 4096 Jul 9 12:33 WormBase | drwxrwsr-x 4 todd wormbase 4096 Jul 9 12:33 WormBase | ||
-rw-rw-r-- 1 todd wormbase 395 Jul 6 14:06 WormBase.pm | -rw-rw-r-- 1 todd wormbase 395 Jul 6 14:06 WormBase.pm | ||
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./lib/RSS: | ./lib/RSS: | ||
total 60 | total 60 | ||
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drwxrwsr-x 4 todd wormbase 4096 Jul 6 14:07 DB | drwxrwsr-x 4 todd wormbase 4096 Jul 6 14:07 DB | ||
-rw-rw-r-- 1 todd wormbase 14687 Jul 9 12:33 ObjectHistory.pm | -rw-rw-r-- 1 todd wormbase 14687 Jul 9 12:33 ObjectHistory.pm | ||
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-rwxrwxr-x 1 todd wormbase 1475 Jul 6 14:07 populate_database.pl | -rwxrwxr-x 1 todd wormbase 1475 Jul 6 14:07 populate_database.pl | ||
-rw-rw-r-- 1 todd wormbase 3885 Jul 6 14:07 README | -rw-rw-r-- 1 todd wormbase 3885 Jul 6 14:07 README | ||
| Line 293: | Line 101: | ||
-rwxrwxr-x 1 todd wormbase 185 Jul 6 14:07 test.pl | -rwxrwxr-x 1 todd wormbase 185 Jul 6 14:07 test.pl | ||
-rwxrwxr-x 1 todd wormbase 1192 Jul 6 14:07 update_static_feeds.pl | -rwxrwxr-x 1 todd wormbase 1192 Jul 6 14:07 update_static_feeds.pl | ||
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./lib/RSS/DB: | ./lib/RSS/DB: | ||
total 12 | total 12 | ||
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drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:07 History | drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:07 History | ||
-rw-rw-r-- 1 todd wormbase 125 Jul 6 14:07 History.pm | -rw-rw-r-- 1 todd wormbase 125 Jul 6 14:07 History.pm | ||
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./lib/RSS/DB/History: | ./lib/RSS/DB/History: | ||
total 12 | total 12 | ||
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-rw-rw-r-- 1 todd wormbase 403 Jul 6 14:07 History.pm | -rw-rw-r-- 1 todd wormbase 403 Jul 6 14:07 History.pm | ||
-rw-rw-r-- 1 todd wormbase 476 Jul 6 14:07 Objects.pm | -rw-rw-r-- 1 todd wormbase 476 Jul 6 14:07 Objects.pm | ||
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./lib/RSS/sql: | ./lib/RSS/sql: | ||
total 8 | total 8 | ||
-rw-rw-r-- 1 todd wormbase 1024 Jul 6 14:07 create_schema.sql | -rw-rw-r-- 1 todd wormbase 1024 Jul 6 14:07 create_schema.sql | ||
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./lib/SKMAP: | ./lib/SKMAP: | ||
| Line 339: | Line 120: | ||
-rw-rw-r-- 1 todd wormbase 2657 Jul 6 14:06 Config.pm | -rw-rw-r-- 1 todd wormbase 2657 Jul 6 14:06 Config.pm | ||
-rw-rw-r-- 1 todd wormbase 1270 Jul 6 14:06 Coordinates.pm | -rw-rw-r-- 1 todd wormbase 1270 Jul 6 14:06 Coordinates.pm | ||
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drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 Data | drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 Data | ||
drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 Image | drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 Image | ||
-rwxrwxr-x 1 todd wormbase 1472 Jul 6 14:06 Search.pm | -rwxrwxr-x 1 todd wormbase 1472 Jul 6 14:06 Search.pm | ||
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./lib/SKMAP/Image: | ./lib/SKMAP/Image: | ||
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-rw-rw-r-- 1 todd wormbase 2537 Jul 6 14:06 Figures.pm | -rw-rw-r-- 1 todd wormbase 2537 Jul 6 14:06 Figures.pm | ||
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./lib/WormBase: | ./lib/WormBase: | ||
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-rw-rw-r-- 1 todd wormbase 10048 Jul 6 14:06 AutocompleteLoad.pm | -rw-rw-r-- 1 todd wormbase 10048 Jul 6 14:06 AutocompleteLoad.pm | ||
-rw-rw-r-- 1 todd wormbase 13389 Jul 9 12:33 Autocomplete.pm | -rw-rw-r-- 1 todd wormbase 13389 Jul 9 12:33 Autocomplete.pm | ||
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-rw-rw-r-- 1 todd wormbase 16606 Jul 6 14:06 FetchData.pm | -rw-rw-r-- 1 todd wormbase 16606 Jul 6 14:06 FetchData.pm | ||
-rw-rw-r-- 1 todd wormbase 6073 Jul 6 14:06 Formatting.pm | -rw-rw-r-- 1 todd wormbase 6073 Jul 6 14:06 Formatting.pm | ||
| Line 383: | Line 137: | ||
drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 Util | drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 Util | ||
-rw-rw-r-- 1 todd wormbase 1293 Jul 6 14:06 Util.pm | -rw-rw-r-- 1 todd wormbase 1293 Jul 6 14:06 Util.pm | ||
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./lib/WormBase/Util: | ./lib/WormBase/Util: | ||
total 8 | total 8 | ||
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-rw-rw-r-- 1 todd wormbase 1304 Jul 6 14:06 Rearrange.pm | -rw-rw-r-- 1 todd wormbase 1304 Jul 6 14:06 Rearrange.pm | ||
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./mapview: | ./mapview: | ||
total 16 | total 16 | ||
| − | + | -rwxrwxr-x 1 todd wormbase 2668 Jul 6 14:06 dasdraw2 DEPRECATED | |
| − | -rwxrwxr-x 1 todd wormbase 2668 Jul 6 14:06 dasdraw2 | + | -rwxrwxr-x 1 todd wormbase 2467 Jul 6 14:06 geneticmap DEPRECATED |
| − | -rwxrwxr-x 1 todd wormbase 2467 Jul 6 14:06 geneticmap | + | -rwxrwxr-x 1 todd wormbase 3360 Jul 6 14:06 sequenceapplet DEPRECATED |
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./microarray: | ./microarray: | ||
total 68 | total 68 | ||
-rwxrwxr-x 1 todd wormbase 2671 Jul 6 14:06 cluster | -rwxrwxr-x 1 todd wormbase 2671 Jul 6 14:06 cluster | ||
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-rwxrwxr-x 1 todd wormbase 13308 Jul 6 14:06 download | -rwxrwxr-x 1 todd wormbase 13308 Jul 6 14:06 download | ||
-rwxrwxr-x 1 todd wormbase 3304 Jul 6 14:06 expression_cluster | -rwxrwxr-x 1 todd wormbase 3304 Jul 6 14:06 expression_cluster | ||
| Line 424: | Line 157: | ||
-rwxrwxr-x 1 todd wormbase 13412 Jul 6 14:06 results | -rwxrwxr-x 1 todd wormbase 13412 Jul 6 14:06 results | ||
-rwxrwxr-x 1 todd wormbase 10833 Jul 6 14:06 search | -rwxrwxr-x 1 todd wormbase 10833 Jul 6 14:06 search | ||
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./misc: | ./misc: | ||
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-rwxrwxr-x 1 todd wormbase 14247 Jul 6 14:06 2005_survey | -rwxrwxr-x 1 todd wormbase 14247 Jul 6 14:06 2005_survey | ||
-rwxrwxr-x 1 todd wormbase 840 Jul 6 14:06 acedb | -rwxrwxr-x 1 todd wormbase 840 Jul 6 14:06 acedb | ||
| Line 439: | Line 165: | ||
-rwxrwxr-x 1 todd wormbase 8758 Jul 6 14:06 biblio | -rwxrwxr-x 1 todd wormbase 8758 Jul 6 14:06 biblio | ||
-rwxrwxr-x 1 todd wormbase 5837 Jul 6 14:06 c2c | -rwxrwxr-x 1 todd wormbase 5837 Jul 6 14:06 c2c | ||
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-rwxrwxr-x 1 todd wormbase 11056 Jul 6 14:06 database_stats | -rwxrwxr-x 1 todd wormbase 11056 Jul 6 14:06 database_stats | ||
-rwxrwxr-x 1 todd wormbase 5530 Jul 6 14:06 digest | -rwxrwxr-x 1 todd wormbase 5530 Jul 6 14:06 digest | ||
| Line 466: | Line 191: | ||
-rwxrwxr-x 1 todd wormbase 3394 Jul 6 14:06 release_stats | -rwxrwxr-x 1 todd wormbase 3394 Jul 6 14:06 release_stats | ||
-rwxrwxr-x 1 todd wormbase 2180 Jul 6 14:06 session | -rwxrwxr-x 1 todd wormbase 2180 Jul 6 14:06 session | ||
| − | -rwxrwxr-x 1 todd wormbase 38513 Jul 6 14:06 site_map | + | -rwxrwxr-x 1 todd wormbase 38513 Jul 6 14:06 site_map todd / gb1 & gb2 / freeze1 |
-rwxrwxr-x 1 todd wormbase 5056 Jul 6 14:06 standard_urls | -rwxrwxr-x 1 todd wormbase 5056 Jul 6 14:06 standard_urls | ||
-rwxrwxr-x 1 todd wormbase 7434 Jul 6 14:06 submit_feedback | -rwxrwxr-x 1 todd wormbase 7434 Jul 6 14:06 submit_feedback | ||
| Line 473: | Line 198: | ||
-rwxrwxr-x 1 todd wormbase 938 Jul 6 14:06 xml | -rwxrwxr-x 1 todd wormbase 938 Jul 6 14:06 xml | ||
-rwxrwxr-x 1 todd wormbase 916 Jul 6 14:06 xml_md5 | -rwxrwxr-x 1 todd wormbase 916 Jul 6 14:06 xml_md5 | ||
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./ontology: | ./ontology: | ||
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-rwxrwxr-x 1 todd wormbase 35612 Jul 6 14:06 anatomy | -rwxrwxr-x 1 todd wormbase 35612 Jul 6 14:06 anatomy | ||
-rwxrwxr-x 1 todd wormbase 7734 Jul 6 14:06 anatomy_browser | -rwxrwxr-x 1 todd wormbase 7734 Jul 6 14:06 anatomy_browser | ||
| Line 498: | Line 206: | ||
drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 browser_lib | drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 browser_lib | ||
-rwxrwxr-x 1 todd wormbase 23926 Jul 6 14:06 browse_tree | -rwxrwxr-x 1 todd wormbase 23926 Jul 6 14:06 browse_tree | ||
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-rwxrwxr-x 1 todd wormbase 24283 Jul 6 14:06 gene | -rwxrwxr-x 1 todd wormbase 24283 Jul 6 14:06 gene | ||
-rwxrwxr-x 1 todd wormbase 9034 Jul 6 14:06 go_dag | -rwxrwxr-x 1 todd wormbase 9034 Jul 6 14:06 go_dag | ||
| Line 511: | Line 218: | ||
./ontology/browser_lib: | ./ontology/browser_lib: | ||
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-rwxrwxr-x 1 todd wormbase 2704 Jul 6 14:06 browser.initd | -rwxrwxr-x 1 todd wormbase 2704 Jul 6 14:06 browser.initd | ||
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-rwxrwxr-x 1 todd wormbase 1029 Jul 6 14:06 launch_ontology_sockets.sh | -rwxrwxr-x 1 todd wormbase 1029 Jul 6 14:06 launch_ontology_sockets.sh | ||
-rw-rw-r-- 1 todd wormbase 22464 Jul 6 14:06 OBrowse.pm | -rw-rw-r-- 1 todd wormbase 22464 Jul 6 14:06 OBrowse.pm | ||
-rw-rw-r-- 1 todd wormbase 765 Jul 6 14:06 README | -rw-rw-r-- 1 todd wormbase 765 Jul 6 14:06 README | ||
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./orthology: | ./orthology: | ||
total 36 | total 36 | ||
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-rwxrwxr-x 1 todd wormbase 11398 Jul 6 14:06 disease | -rwxrwxr-x 1 todd wormbase 11398 Jul 6 14:06 disease | ||
-rwxrwxr-x 1 todd wormbase 10591 Jul 6 14:06 gene | -rwxrwxr-x 1 todd wormbase 10591 Jul 6 14:06 gene | ||
-rwxrwxr-x 1 todd wormbase 5841 Jul 6 14:06 search | -rwxrwxr-x 1 todd wormbase 5841 Jul 6 14:06 search | ||
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./private: | ./private: | ||
total 24 | total 24 | ||
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-rwxrwxr-x 1 todd wormbase 6514 Jul 6 14:06 manage_newsfeeds | -rwxrwxr-x 1 todd wormbase 6514 Jul 6 14:06 manage_newsfeeds | ||
-rwxrwxr-x 1 todd wormbase 3288 Jul 6 14:06 test_urls | -rwxrwxr-x 1 todd wormbase 3288 Jul 6 14:06 test_urls | ||
-rwxrwxr-x 1 todd wormbase 5939 Jul 6 14:06 update_newsfeed | -rwxrwxr-x 1 todd wormbase 5939 Jul 6 14:06 update_newsfeed | ||
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./searches: | ./searches: | ||
| Line 568: | Line 247: | ||
-rwxrwxr-x 1 todd wormbase 2484 Jul 6 14:06 browser | -rwxrwxr-x 1 todd wormbase 2484 Jul 6 14:06 browser | ||
-rwxrwxr-x 1 todd wormbase 4222 Jul 6 14:06 class_query | -rwxrwxr-x 1 todd wormbase 4222 Jul 6 14:06 class_query | ||
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-rwxrwxr-x 1 todd wormbase 11843 Jul 6 14:06 dasview | -rwxrwxr-x 1 todd wormbase 11843 Jul 6 14:06 dasview | ||
-rwxrwxr-x 1 todd wormbase 4391 Jul 6 14:06 download_index | -rwxrwxr-x 1 todd wormbase 4391 Jul 6 14:06 download_index | ||
| Line 597: | Line 275: | ||
./searches/advanced: | ./searches/advanced: | ||
total 60 | total 60 | ||
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-rwxrwxr-x 1 todd wormbase 43224 Jul 6 14:06 dumper | -rwxrwxr-x 1 todd wormbase 43224 Jul 6 14:06 dumper | ||
-rwxrwxr-x 1 todd wormbase 4289 Jul 6 14:06 dumper.cfg | -rwxrwxr-x 1 todd wormbase 4289 Jul 6 14:06 dumper.cfg | ||
-rw-rw-r-- 1 todd wormbase 2268 Jul 6 14:06 dumper.methods.txt | -rw-rw-r-- 1 todd wormbase 2268 Jul 6 14:06 dumper.methods.txt | ||
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./seq: | ./seq: | ||
| − | + | -rwxrwxr-x 1 todd wormbase 1009 Jul 6 14:06 align DEPRECATED | |
| − | -rwxrwxr-x 1 todd wormbase 1009 Jul 6 14:06 align | + | -rwxrwxr-x 1 todd wormbase 11448 Jul 6 14:06 aligner BROKEN |
| − | -rwxrwxr-x 1 todd wormbase 11448 Jul 6 14:06 aligner | ||
-rwxrwxr-x 1 todd wormbase 11644 Jul 6 14:06 clone | -rwxrwxr-x 1 todd wormbase 11644 Jul 6 14:06 clone | ||
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-rwxr-xr-x 1 root wormbase 34287 Jul 13 12:33 das | -rwxr-xr-x 1 root wormbase 34287 Jul 13 12:33 das | ||
-rwxrwxr-x 1 todd wormbase 2202 Jul 6 14:06 dasdraw | -rwxrwxr-x 1 todd wormbase 2202 Jul 6 14:06 dasdraw | ||
| Line 637: | Line 300: | ||
-rwxrwxr-x 1 todd wormbase 3571 Jul 6 14:06 interaction_viewer | -rwxrwxr-x 1 todd wormbase 3571 Jul 6 14:06 interaction_viewer | ||
-rwxr-xr-x 1 root wormbase 993 Jul 13 12:33 moby_server | -rwxr-xr-x 1 root wormbase 993 Jul 13 12:33 moby_server | ||
| − | -rwxrwxr-x 1 todd wormbase 7636 Jul 6 14:06 pcr | + | -rwxrwxr-x 1 todd wormbase 7636 Jul 6 14:06 pcr todd / not tested yet in production |
-rwxrwxr-x 1 todd wormbase 7634 Jul 6 14:06 position_matrix | -rwxrwxr-x 1 todd wormbase 7634 Jul 6 14:06 position_matrix | ||
-rwxrwxr-x 1 todd wormbase 4047 Jul 6 14:06 promoter | -rwxrwxr-x 1 todd wormbase 4047 Jul 6 14:06 promoter | ||
| − | -rwxrwxr-x 1 todd wormbase 34886 Jul 6 14:06 protein | + | -rwxrwxr-x 1 todd wormbase 34886 Jul 6 14:06 protein todd / gb1 & gb2 / freeze1 |
| − | + | -rwxrwxr-x 1 todd wormbase 17613 Jul 6 14:06 rnai BROKEN | |
| − | -rwxrwxr-x 1 todd wormbase 17613 Jul 6 14:06 rnai | ||
-rwxrwxr-x 1 todd wormbase 8614 Jul 6 14:06 sage | -rwxrwxr-x 1 todd wormbase 8614 Jul 6 14:06 sage | ||
-rwxrwxr-x 1 todd wormbase 45150 Jul 6 14:06 sequence | -rwxrwxr-x 1 todd wormbase 45150 Jul 6 14:06 sequence | ||
| Line 651: | Line 313: | ||
-rwxrwxr-x 1 todd wormbase 3256 Jul 6 14:06 wtp | -rwxrwxr-x 1 todd wormbase 3256 Jul 6 14:06 wtp | ||
-rwxrwxr-x 1 todd wormbase 2405 Jul 6 14:06 y2h | -rwxrwxr-x 1 todd wormbase 2405 Jul 6 14:06 y2h | ||
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./seq/gb2: | ./seq/gb2: | ||
| Line 665: | Line 321: | ||
-r-xr-xr-x 1 todd wormbase 21468 Jul 10 09:34 gbrowse_gmap | -r-xr-xr-x 1 todd wormbase 21468 Jul 10 09:34 gbrowse_gmap | ||
-r-xr-xr-x 1 todd wormbase 20962 Jul 10 09:34 gbrowse_img | -r-xr-xr-x 1 todd wormbase 20962 Jul 10 09:34 gbrowse_img | ||
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./SR_expression: | ./SR_expression: | ||
total 80 | total 80 | ||
| − | + | -rwxrwxr-x 1 todd wormbase 10605 Jul 6 14:06 SRcell.pl DEPRECATED | |
| − | -rwxrwxr-x 1 todd wormbase 10605 Jul 6 14:06 SRcell.pl | + | -rwxrwxr-x 1 todd wormbase 21958 Jul 6 14:06 SR_expression.pl DEPRECATED |
| − | -rwxrwxr-x 1 todd wormbase 21958 Jul 6 14:06 SR_expression.pl | + | -rwxrwxr-x 1 todd wormbase 11220 Jul 6 14:06 SRsearch.pl DEPRECATED |
| − | -rwxrwxr-x 1 todd wormbase 11220 Jul 6 14:06 SRsearch.pl | + | -rwxrwxr-x 1 todd wormbase 26697 Jul 6 14:06 SRsubmit.pl DEPRECATED |
| − | -rwxrwxr-x 1 todd wormbase 26697 Jul 6 14:06 SRsubmit.pl | + | </pre> |
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Latest revision as of 17:44, 16 August 2010
LEGEND:
tester / gbrowse compliance / which production node it has been tested on
eg:
todd / gb1 & gb2 / freeze1
Tested by todd, gb1 and gb2 compliant, tested on freeze1
./cell: -rwxrwxr-x 1 todd wormbase 20053 Jul 6 14:06 cell.cgi -rwxrwxr-x 1 todd wormbase 3916 Jul 6 14:06 make_pedigree.cgi -rwxrwxr-x 1 todd wormbase 253 Jul 6 14:06 mindofworm -rwxrwxr-x 1 todd wormbase 303783 Jul 6 14:06 neato drwxrwsr-x 4 todd wormbase 4096 Jul 6 14:06 neuron -rwxrwxr-x 1 todd wormbase 4042 Jul 6 14:06 neuron.cgi -rw-rw-r-- 1 todd wormbase 1318 Jul 6 14:06 Pedigree.pm ./cell/neuron: total 336 -rwxrwxr-x 1 todd wormbase 1876 Jul 6 14:06 dot2png.cgi drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 img -rwxrwxr-x 1 todd wormbase 303783 Jul 6 14:06 neato -rwxrwxr-x 1 todd wormbase 3726 Jul 6 14:06 neuron.cgi -rwxrwxr-x 1 todd wormbase 3419 Jul 6 14:06 neuron_png.pl -rwxrwxr-x 1 todd wormbase 2108 Jul 6 14:06 plain2png.pl ./curate: total 28 -rwxrwxr-x 1 todd wormbase 6812 Jul 6 14:07 base -rwxrwxr-x 1 todd wormbase 3865 Jul 6 14:07 online_forms -rwxrwxr-x 1 todd wormbase 8474 Jul 6 14:07 submit ./gene: total 932 -rwxrwxr-x 1 todd wormbase 50302 Jul 6 14:07 allele DEPRECATED -rwxrwxr-x 1 todd wormbase 4767 Jul 6 14:07 antibody todd / gb1 & gb2 / freeze1 -rwxrwxr-x 1 todd wormbase 22832 Jul 6 14:07 expression todd / not tested yet in production -rwxrwxr-x 1 todd wormbase 6467 Jul 6 14:07 expr_profile todd / not tested yet in production -rwxrwxr-x 1 todd wormbase 140250 Jul 13 13:14 gene todd / not tested yet in production -rwxrwxr-x 1 todd wormbase 4397 Jul 6 14:07 geneapplet DEPRECATED -rwxrwxr-x 1 todd wormbase 7058 Jul 6 14:07 gene_class todd / gb1 & gb2 / freeze1 -rwxrwxr-x 1 todd wormbase 1682 Jul 6 14:07 gene_in_profile -rwxrwxr-x 1 todd wormbase 4466 Jul 6 14:07 genetable -rwxrwxr-x 1 todd wormbase 14333 Jul 6 14:07 gmap -rwxrwxr-x 1 todd wormbase 8019 Jul 6 14:07 homology_group -rwxrwxr-x 1 todd wormbase 23764 Jul 6 14:07 interaction -rwxrwxr-x 1 todd wormbase 2305 Jul 6 14:07 interaction_details -rwxrwxr-x 1 todd wormbase 11293 Jul 6 14:07 locus BROKEN -rwxrwxr-x 1 todd wormbase 4477 Jul 6 14:07 mapping_data -rwxrwxr-x 1 todd wormbase 3353 Jul 6 14:07 motif todd / gb1 & gb2 / freeze1 -rw-rw-r-- 1 todd wormbase 23335 Jul 6 14:07 mountains_coords.txt -rwxrwxr-x 1 todd wormbase 3088 Jul 6 14:07 operon todd / gb1 & gb2 / freeze1 -rwxrwxr-x 1 todd wormbase 29456 Jul 6 14:07 rearrange todd / not tested yet in production -rwxrwxr-x 1 todd wormbase 5440 Jul 6 14:07 regulation todd / gb1 & gb2 / freeze1 drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:07 sk_map -rwxrwxr-x 1 todd wormbase 12043 Jul 6 14:07 strain todd / gb1 & gb2 / freeze1 -rwxrwxr-x 1 todd wormbase 5348 Jul 6 14:07 structure_data -rwxrwxr-x 1 todd wormbase 5308 Jul 6 14:07 transgene todd / not tested yet in production -rwxrwxr-x 1 todd wormbase 6108 Jul 6 14:07 transgene_tbls -rwxrwxr-x 1 todd wormbase 92220 Jul 6 14:07 variation ./generic: total 16 -rwxrwxr-x 1 todd wormbase 1237 Jul 6 14:06 acetable -rw-rw-r-- 1 todd wormbase 1380 Jul 6 14:06 report -rwxrwxr-x 1 todd wormbase 3945 Jul 6 14:06 tree ./lib: total 528 drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 CGI drwxrwsr-x 4 todd wormbase 4096 Jul 6 14:07 CSS -rwxrwxr-x 1 todd wormbase 6580 Jul 6 14:06 CSS.pm -rw-rw-r-- 1 todd wormbase 1337 Jul 6 14:06 develSubs.pm -rw-rw-r-- 1 todd wormbase 1314 Jul 6 14:06 ElegansOligos.pm -rw-rw-r-- 1 todd wormbase 130862 Jul 9 12:33 ElegansSubs.pm -rw-rw-r-- 1 todd wormbase 38711 Jul 6 14:06 GBsyn.pm -rw-rw-r-- 1 todd wormbase 5780 Jul 6 14:06 MerlynAO.pm -rw-rw-r-- 1 todd wormbase 3742 Jul 6 14:06 MerlynGO.pm -rwxrwxr-x 1 todd wormbase 612 Jul 1 13:02 OntologySubs.pl -rwxrwxr-x 1 todd wormbase 172 Jul 6 14:06 OrthologySubs.pm -rw-rw-r-- 1 todd wormbase 7651 Jul 6 14:06 pICalculator.pm drwxrwsr-x 5 todd wormbase 4096 Jul 9 12:33 RSS -rw-rw-r-- 1 todd wormbase 8658 Jul 6 14:06 Seqview.pm drwxrwsr-x 5 todd wormbase 4096 Jul 6 14:06 SKMAP -rw-rw-r-- 1 todd wormbase 5069 Jul 6 14:07 Splicer.pm -rw-rw-r-- 1 todd wormbase 6891 Jul 6 14:06 StandardURLDumpers.pm -rw-rw-r-- 1 todd wormbase 1283 Jul 6 14:06 Util.pm drwxrwsr-x 4 todd wormbase 4096 Jul 9 12:33 WormBase -rw-rw-r-- 1 todd wormbase 395 Jul 6 14:06 WormBase.pm ./lib/RSS: total 60 drwxrwsr-x 4 todd wormbase 4096 Jul 6 14:07 DB -rw-rw-r-- 1 todd wormbase 14687 Jul 9 12:33 ObjectHistory.pm -rwxrwxr-x 1 todd wormbase 1475 Jul 6 14:07 populate_database.pl -rw-rw-r-- 1 todd wormbase 3885 Jul 6 14:07 README drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:07 sql -rwxrwxr-x 1 todd wormbase 185 Jul 6 14:07 test.pl -rwxrwxr-x 1 todd wormbase 1192 Jul 6 14:07 update_static_feeds.pl ./lib/RSS/DB: total 12 drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:07 History -rw-rw-r-- 1 todd wormbase 125 Jul 6 14:07 History.pm ./lib/RSS/DB/History: total 12 -rw-rw-r-- 1 todd wormbase 403 Jul 6 14:07 History.pm -rw-rw-r-- 1 todd wormbase 476 Jul 6 14:07 Objects.pm ./lib/RSS/sql: total 8 -rw-rw-r-- 1 todd wormbase 1024 Jul 6 14:07 create_schema.sql ./lib/SKMAP: total 24 -rw-rw-r-- 1 todd wormbase 2657 Jul 6 14:06 Config.pm -rw-rw-r-- 1 todd wormbase 1270 Jul 6 14:06 Coordinates.pm drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 Data drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 Image -rwxrwxr-x 1 todd wormbase 1472 Jul 6 14:06 Search.pm ./lib/SKMAP/Image: -rw-rw-r-- 1 todd wormbase 2537 Jul 6 14:06 Figures.pm ./lib/WormBase: -rw-rw-r-- 1 todd wormbase 10048 Jul 6 14:06 AutocompleteLoad.pm -rw-rw-r-- 1 todd wormbase 13389 Jul 9 12:33 Autocomplete.pm -rw-rw-r-- 1 todd wormbase 16606 Jul 6 14:06 FetchData.pm -rw-rw-r-- 1 todd wormbase 6073 Jul 6 14:06 Formatting.pm -rw-rw-r-- 1 todd wormbase 5329 Jul 6 14:06 GMapView.pm -rw-rw-r-- 1 todd wormbase 12659 Jul 9 12:33 Table.pm -rw-rw-r-- 1 todd wormbase 9358 Jul 6 14:06 Toggle.pm drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 Util -rw-rw-r-- 1 todd wormbase 1293 Jul 6 14:06 Util.pm ./lib/WormBase/Util: total 8 -rw-rw-r-- 1 todd wormbase 1304 Jul 6 14:06 Rearrange.pm ./mapview: total 16 -rwxrwxr-x 1 todd wormbase 2668 Jul 6 14:06 dasdraw2 DEPRECATED -rwxrwxr-x 1 todd wormbase 2467 Jul 6 14:06 geneticmap DEPRECATED -rwxrwxr-x 1 todd wormbase 3360 Jul 6 14:06 sequenceapplet DEPRECATED ./microarray: total 68 -rwxrwxr-x 1 todd wormbase 2671 Jul 6 14:06 cluster -rwxrwxr-x 1 todd wormbase 13308 Jul 6 14:06 download -rwxrwxr-x 1 todd wormbase 3304 Jul 6 14:06 expression_cluster -rwxrwxr-x 1 todd wormbase 6600 Jul 6 14:06 microarray_aff -rwxrwxr-x 1 todd wormbase 1246 Jul 6 14:06 microarray_smd -rwxrwxr-x 1 todd wormbase 13412 Jul 6 14:06 results -rwxrwxr-x 1 todd wormbase 10833 Jul 6 14:06 search ./misc: -rwxrwxr-x 1 todd wormbase 14247 Jul 6 14:06 2005_survey -rwxrwxr-x 1 todd wormbase 840 Jul 6 14:06 acedb -rwxrwxr-x 1 todd wormbase 5528 Jul 6 14:06 author -rwxrwxr-x 1 todd wormbase 991 Jul 6 14:06 author_example -rwxrwxr-x 1 todd wormbase 8758 Jul 6 14:06 biblio -rwxrwxr-x 1 todd wormbase 5837 Jul 6 14:06 c2c -rwxrwxr-x 1 todd wormbase 11056 Jul 6 14:06 database_stats -rwxrwxr-x 1 todd wormbase 5530 Jul 6 14:06 digest -rwxrwxr-x 1 todd wormbase 699 Jul 6 14:06 download_features -rwxrwxr-x 1 todd wormbase 728 Jul 6 14:06 download_sequence -rwxrwxr-x 1 todd wormbase 13963 Jul 6 14:06 epic -rwxrwxr-x 1 todd wormbase 5294 Jul 6 14:06 etree -rwxrwxr-x 1 todd wormbase 6215 Jul 6 14:06 feedback -rwxrwxr-x 1 todd wormbase 6353 Jul 6 14:06 format_datamining_example -rwxrwxr-x 1 todd wormbase 3004 Jul 6 14:06 gbrowse_popup -rwxrwxr-x 1 todd wormbase 3280 Jul 6 14:06 geo_map_by_paper -rwxrwxr-x 1 todd wormbase 9692 Jul 6 14:06 glossary -rwxrwxr-x 1 todd wormbase 1242 Jul 6 14:06 help -rwxrwxr-x 1 todd wormbase 3779 Jul 6 14:06 inline_feed -rwxrwxr-x 1 todd wormbase 6796 Jul 6 14:06 laboratory -rwxrwxr-x 1 todd wormbase 4731 Jul 6 14:06 life_stage -rwxrwxr-x 1 todd wormbase 1809 Jul 6 14:06 marc -rwxrwxr-x 1 todd wormbase 3402 Jul 6 14:06 model -rwxrwxr-x 1 todd wormbase 665 Jul 6 14:06 not_found -rwxrwxr-x 1 todd wormbase 11723 Jul 6 14:06 paper -rwxrwxr-x 1 todd wormbase 20521 Jul 6 14:06 person -rwxrwxr-x 1 todd wormbase 10560 Jul 6 14:06 person_name -rwxrwxr-x 1 todd wormbase 18882 Jul 6 14:06 phenotype -rwxrwxr-x 1 todd wormbase 701 Jul 6 14:06 random_pic -rwxrwxr-x 1 todd wormbase 188 Jul 6 14:06 redirect -rwxrwxr-x 1 todd wormbase 3394 Jul 6 14:06 release_stats -rwxrwxr-x 1 todd wormbase 2180 Jul 6 14:06 session -rwxrwxr-x 1 todd wormbase 38513 Jul 6 14:06 site_map todd / gb1 & gb2 / freeze1 -rwxrwxr-x 1 todd wormbase 5056 Jul 6 14:06 standard_urls -rwxrwxr-x 1 todd wormbase 7434 Jul 6 14:06 submit_feedback -rwxrwxr-x 1 todd wormbase 857 Jul 6 14:06 text -rwxrwxr-x 1 todd wormbase 3860 Jul 6 14:06 wb_people -rwxrwxr-x 1 todd wormbase 938 Jul 6 14:06 xml -rwxrwxr-x 1 todd wormbase 916 Jul 6 14:06 xml_md5 ./ontology: -rwxrwxr-x 1 todd wormbase 35612 Jul 6 14:06 anatomy -rwxrwxr-x 1 todd wormbase 7734 Jul 6 14:06 anatomy_browser -rwxrwxr-x 1 todd wormbase 25040 Jul 6 14:06 browse -rwxrwxr-x 1 todd wormbase 4703 Jul 6 14:06 browser drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 browser_lib -rwxrwxr-x 1 todd wormbase 23926 Jul 6 14:06 browse_tree -rwxrwxr-x 1 todd wormbase 24283 Jul 6 14:06 gene -rwxrwxr-x 1 todd wormbase 9034 Jul 6 14:06 go_dag -rwxrwxr-x 1 todd wormbase 7608 Jul 6 14:06 go_detail -rwxrwxr-x 1 todd wormbase 8812 Jul 6 14:06 goterm -rw-rw-r-- 1 todd wormbase 1330936 Jul 6 14:06 id2name.txt -rw-rw-r-- 1 todd wormbase 964896 Jul 6 14:06 id2parents.txt -rw-rw-r-- 1 todd wormbase 536044 Jul 6 14:06 parent2ids.txt -rwxrwxr-x 1 todd wormbase 17870 Jul 6 14:06 search -rw-rw-r-- 1 todd wormbase 8741690 Jul 6 14:06 search_data.txt -rwxrwxr-x 1 todd wormbase 11945 Jul 6 14:06 tree_lister ./ontology/browser_lib: -rwxrwxr-x 1 todd wormbase 2704 Jul 6 14:06 browser.initd -rwxrwxr-x 1 todd wormbase 1029 Jul 6 14:06 launch_ontology_sockets.sh -rw-rw-r-- 1 todd wormbase 22464 Jul 6 14:06 OBrowse.pm -rw-rw-r-- 1 todd wormbase 765 Jul 6 14:06 README ./orthology: total 36 -rwxrwxr-x 1 todd wormbase 11398 Jul 6 14:06 disease -rwxrwxr-x 1 todd wormbase 10591 Jul 6 14:06 gene -rwxrwxr-x 1 todd wormbase 5841 Jul 6 14:06 search ./private: total 24 -rwxrwxr-x 1 todd wormbase 6514 Jul 6 14:06 manage_newsfeeds -rwxrwxr-x 1 todd wormbase 3288 Jul 6 14:06 test_urls -rwxrwxr-x 1 todd wormbase 5939 Jul 6 14:06 update_newsfeed ./searches: total 600 drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 advanced -rwxrwxr-x 1 todd wormbase 7784 Jul 6 14:06 aql_query -rwxrwxr-x 1 todd wormbase 17902 Jul 6 14:06 basic -rwxrwxr-x 1 todd wormbase 55519 Jul 6 14:06 batch_genes -rwxrwxr-x 1 todd wormbase 20537 Jul 6 14:06 blast0212 -rwxrwxr-x 1 todd wormbase 47081 Jul 6 14:06 blast_blat -rwxrwxr-x 1 todd wormbase 9731 Jul 6 14:06 blast_ori -rwxrwxr-x 1 todd wormbase 154 Jul 6 14:06 blat -rwxrwxr-x 1 todd wormbase 2484 Jul 6 14:06 browser -rwxrwxr-x 1 todd wormbase 4222 Jul 6 14:06 class_query -rwxrwxr-x 1 todd wormbase 11843 Jul 6 14:06 dasview -rwxrwxr-x 1 todd wormbase 4391 Jul 6 14:06 download_index -rwxrwxr-x 1 todd wormbase 13931 Jul 6 14:06 epcr -rwxrwxr-x 1 todd wormbase 95462 Jul 6 14:06 expr_search -rwxrwxr-x 1 todd wormbase 5457 Jul 6 14:06 fast_facts -rwxrwxr-x 1 todd wormbase 5437 Jul 6 14:06 gotable -rwxrwxr-x 1 todd wormbase 8860 Jul 6 14:06 graf.cgi -rwxrwxr-x 1 todd wormbase 13523 Jul 6 14:06 hunter.cgi -rwxrwxr-x 1 todd wormbase 35626 Jul 6 14:06 info_dump -rwxrwxr-x 1 todd wormbase 8016 Jul 6 14:06 interval -rwxrwxr-x 1 todd wormbase 18785 Jul 6 14:06 markers -rwxrwxr-x 1 todd wormbase 10634 Jul 6 14:06 multi -rwxrwxr-x 1 todd wormbase 4865 Jul 6 14:06 multi.search -rwxrwxr-x 1 todd wormbase 3830 Jul 6 14:06 neuron302.cgi -rwxrwxr-x 1 todd wormbase 28272 Jul 6 14:06 neuron_display -rwxrwxr-x 1 todd wormbase 5183 Jul 6 14:06 neuron_graf.cgi -rwxrwxr-x 1 todd wormbase 8858 Jul 6 14:06 pedigree -rwxrwxr-x 1 todd wormbase 6165 Jul 6 14:06 query -rwxrwxr-x 1 todd wormbase 15846 Jul 6 14:06 rnai_search -rwxrwxr-x 1 todd wormbase 4415 Jul 6 14:06 search_index -rwxrwxr-x 1 todd wormbase 1697 Jul 6 14:06 standard_urls -rwxrwxr-x 1 todd wormbase 36155 Jul 6 14:06 strains -rwxrwxr-x 1 todd wormbase 2358 Jul 6 14:06 text -rwxrwxr-x 1 todd wormbase 1926 Jul 6 14:06 text302 -rwxrwxr-x 1 todd wormbase 6349 Jul 6 14:06 wb_query ./searches/advanced: total 60 -rwxrwxr-x 1 todd wormbase 43224 Jul 6 14:06 dumper -rwxrwxr-x 1 todd wormbase 4289 Jul 6 14:06 dumper.cfg -rw-rw-r-- 1 todd wormbase 2268 Jul 6 14:06 dumper.methods.txt ./seq: -rwxrwxr-x 1 todd wormbase 1009 Jul 6 14:06 align DEPRECATED -rwxrwxr-x 1 todd wormbase 11448 Jul 6 14:06 aligner BROKEN -rwxrwxr-x 1 todd wormbase 11644 Jul 6 14:06 clone -rwxr-xr-x 1 root wormbase 34287 Jul 13 12:33 das -rwxrwxr-x 1 todd wormbase 2202 Jul 6 14:06 dasdraw -rwxrwxr-x 1 todd wormbase 2390 Jul 6 14:06 dna -rwxrwxr-x 1 todd wormbase 4985 Jul 6 14:06 do_align -rwxrwxr-x 1 todd wormbase 24840 Jul 6 14:06 ebsyn -rwxrwxr-x 1 todd wormbase 15999 Jul 6 14:06 frend drwxr-sr-x 2 todd wormbase 4096 Jul 10 10:00 gb2 -rwxr-xr-x 1 root wormbase 9258 Jul 13 12:33 gbgff -rwxr-xr-x 1 todd wormbase 125302 Jul 13 12:41 gbrowse -rwxr-xr-x 1 todd wormbase 15843 Jul 13 12:33 gbrowse_details -rwxr-xr-x 1 todd wormbase 4654 Jul 13 12:33 gbrowse_est -rwxr-xr-x 1 todd wormbase 35795 Jul 13 12:33 gbrowse_img -rwxr-xr-x 1 todd wormbase 50095 Jul 13 12:33 gbrowse_moby -rwxr-xr-x 1 todd wormbase 50059 Jul 13 12:33 gbrowse_syn -rwxrwxr-x 1 todd wormbase 4292 Jul 6 14:06 interaction -rwxrwxr-x 1 todd wormbase 3571 Jul 6 14:06 interaction_viewer -rwxr-xr-x 1 root wormbase 993 Jul 13 12:33 moby_server -rwxrwxr-x 1 todd wormbase 7636 Jul 6 14:06 pcr todd / not tested yet in production -rwxrwxr-x 1 todd wormbase 7634 Jul 6 14:06 position_matrix -rwxrwxr-x 1 todd wormbase 4047 Jul 6 14:06 promoter -rwxrwxr-x 1 todd wormbase 34886 Jul 6 14:06 protein todd / gb1 & gb2 / freeze1 -rwxrwxr-x 1 todd wormbase 17613 Jul 6 14:06 rnai BROKEN -rwxrwxr-x 1 todd wormbase 8614 Jul 6 14:06 sage -rwxrwxr-x 1 todd wormbase 45150 Jul 6 14:06 sequence -rwxrwxr-x 1 todd wormbase 13506 Jul 6 14:06 show_mult_align -rwxrwxr-x 1 todd wormbase 24250 Jul 6 14:06 transcript -rwxrwxr-x 1 todd wormbase 24282 Jul 6 14:06 tr_script -rwxr-xr-x 1 root wormbase 4166 Jul 13 12:33 tutorial_test.pl -rwxrwxr-x 1 todd wormbase 3256 Jul 6 14:06 wtp -rwxrwxr-x 1 todd wormbase 2405 Jul 6 14:06 y2h ./seq/gb2: total 76 -r--r--r-- 1 todd wormbase 1119 Jul 10 09:34 gbgff -r-xr-xr-x 1 todd wormbase 671 Jul 10 09:34 gbrowse -r-xr-xr-x 1 todd wormbase 18077 Jul 10 09:34 gbrowse_details -r-xr-xr-x 1 todd wormbase 21468 Jul 10 09:34 gbrowse_gmap -r-xr-xr-x 1 todd wormbase 20962 Jul 10 09:34 gbrowse_img ./SR_expression: total 80 -rwxrwxr-x 1 todd wormbase 10605 Jul 6 14:06 SRcell.pl DEPRECATED -rwxrwxr-x 1 todd wormbase 21958 Jul 6 14:06 SR_expression.pl DEPRECATED -rwxrwxr-x 1 todd wormbase 11220 Jul 6 14:06 SRsearch.pl DEPRECATED -rwxrwxr-x 1 todd wormbase 26697 Jul 6 14:06 SRsubmit.pl DEPRECATED
