Difference between revisions of "Testing Form - 20130611"
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*Delete annotation functionality | *Delete annotation functionality | ||
| − | ** | + | **Annotation is made invalid |
| + | |||
| + | *Already curated | ||
| + | **If I select the already curated option for a sentence, does the form try to send that to Protein2GO? | ||
| + | |||
| + | *Entering a new component and GO term using free text | ||
| + | **In relationship index HTML page, the GO term and GO id are entered together in one column and the ID column says no GO id found | ||
| + | **FIXED - term and id now showing in separate columns | ||
| + | **index does not need to store GO id, but display of suggested annotations (column 2 component-GO term) will also show GO ID for curator reference | ||
| + | |||
| + | *For some Cellular Component terms, there's a tag in the OBO file is_obsolete: true. | ||
| + | **These GO terms should be excluded from the auto-complete list so curators can't choose them for annotation (they'll get an error message from Protein2GO if they do). | ||
| + | |||
| + | *New component-GO term relationships | ||
| + | **At what point is this entered into Column 2 of the curation form? | ||
| + | **Hit submit - for each annotation, gets all values, sends to protein2go, enters into postgres, finds gene product, looks for component-go term, adds to mapping | ||
| + | |||
| + | *Meaning of 'curated' | ||
| + | **Would be nice to include sentences with 'Already curate' or (just) a 'Sentence Classification' as 'curated' since curators have looked at these and made a decision about them | ||
Latest revision as of 19:04, 11 June 2013
- Delete annotation functionality
- Annotation is made invalid
- Already curated
- If I select the already curated option for a sentence, does the form try to send that to Protein2GO?
- Entering a new component and GO term using free text
- In relationship index HTML page, the GO term and GO id are entered together in one column and the ID column says no GO id found
- FIXED - term and id now showing in separate columns
- index does not need to store GO id, but display of suggested annotations (column 2 component-GO term) will also show GO ID for curator reference
- For some Cellular Component terms, there's a tag in the OBO file is_obsolete: true.
- These GO terms should be excluded from the auto-complete list so curators can't choose them for annotation (they'll get an error message from Protein2GO if they do).
- New component-GO term relationships
- At what point is this entered into Column 2 of the curation form?
- Hit submit - for each annotation, gets all values, sends to protein2go, enters into postgres, finds gene product, looks for component-go term, adds to mapping
- Meaning of 'curated'
- Would be nice to include sentences with 'Already curate' or (just) a 'Sentence Classification' as 'curated' since curators have looked at these and made a decision about them
