Difference between revisions of "WormBase Model:Expression cluster"
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?Expression_cluster Description ?Text // refers to Biological meaning of this cluster group | ?Expression_cluster Description ?Text // refers to Biological meaning of this cluster group | ||
Algorithm Text // refers to the algorithm that was used to get this clustering result. | Algorithm Text // refers to the algorithm that was used to get this clustering result. | ||
| − | Reference ?Paper XREF Expression_cluster | + | Reference ?Paper XREF Expression_cluster //reference of the experiment |
Microarray_results ?Microarray_results Text #Evidence //refers to all experimental results included in the cluster. | Microarray_results ?Microarray_results Text #Evidence //refers to all experimental results included in the cluster. | ||
| − | SAGE_tag ?SAGE_tag Text #Evidence | + | SAGE_tag ?SAGE_tag Text #Evidence //this is for clustering results concluded from SAGE experiment |
| − | Gene ?Gene XREF Expression_cluster #Evidence //Igor: populated during build based on Microarray_results mapping | + | Gene ?Gene XREF Expression_cluster #Evidence //Igor: populated during build based on Microarray_results mapping. Wen: sometimes entered directly when no microarray spot IDs were provided by the authors. |
| − | Expr_pattern ?Expr_pattern XREF Expression_cluster #Evidence // | + | Expr_pattern ?Expr_pattern XREF Expression_cluster #Evidence //Wen: for clustering results concluded from Localizome |
| − | Remark ?Text #Evidence | + | Remark ?Text #Evidence //for any other comments |
Anatomy_term ?Anatomy_term XREF Expression_cluster #Evidence //Describes microarray experiments involving expression profiling in a particular tissue or cell Igor Dec 06 | Anatomy_term ?Anatomy_term XREF Expression_cluster #Evidence //Describes microarray experiments involving expression profiling in a particular tissue or cell Igor Dec 06 | ||
| Line 34: | Line 34: | ||
== unused tags == | == unused tags == | ||
| − | SAGE_tag | + | SAGE_tag - can be removed. |
| − | Expr_pattern | + | Expr_pattern - this is actually used by one paper regarding Localizome. |
Latest revision as of 22:50, 6 December 2010
Curator Comments/Description
Model
//////////////////////////////////
//
// ?Expression_cluster class
// For microarray data clustering results.
//
//////////////////////////////////
?Expression_cluster Description ?Text // refers to Biological meaning of this cluster group
Algorithm Text // refers to the algorithm that was used to get this clustering result.
Reference ?Paper XREF Expression_cluster //reference of the experiment
Microarray_results ?Microarray_results Text #Evidence //refers to all experimental results included in the cluster.
SAGE_tag ?SAGE_tag Text #Evidence //this is for clustering results concluded from SAGE experiment
Gene ?Gene XREF Expression_cluster #Evidence //Igor: populated during build based on Microarray_results mapping. Wen: sometimes entered directly when no microarray spot IDs were provided by the authors.
Expr_pattern ?Expr_pattern XREF Expression_cluster #Evidence //Wen: for clustering results concluded from Localizome
Remark ?Text #Evidence //for any other comments
Anatomy_term ?Anatomy_term XREF Expression_cluster #Evidence //Describes microarray experiments involving expression profiling in a particular tissue or cell Igor Dec 06
Proposed Changes
unused tags
SAGE_tag - can be removed.
Expr_pattern - this is actually used by one paper regarding Localizome.
