Difference between revisions of "WormBase Model:Interaction"
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== Model == | == Model == | ||
<pre> | <pre> | ||
| + | //////////////////////////////////////////////////////////////////////////////// | ||
| + | // | ||
| + | // ?Interaction class for Andrei WBInteraction00000001 | ||
| + | // Replaces the old interaction model. The main enhancements are information about the interactors and the phenotypes | ||
| + | // relevant to the interaction. For the directional interactions (tags:Regulatory, Suppression, Enhancement, Epistasis) | ||
| + | // the directionality of the interaction is described by the tags Effector and Effected as follows: Effector "Regulates" | ||
| + | // ("Suppresses", "Enhances", or "IsEpistatic To") Effected. | ||
| + | // | ||
| + | // For the rest of the interactions (the non-directional kind) Effector and Effected are considered equivalent. | ||
| + | // | ||
| + | //////////////////////////////////////////////////////////////////////////////// | ||
| + | |||
| + | ?Interaction Evidence #Evidence | ||
| + | Interactor ?Gene XREF Interaction #Interactor_info | ||
| + | Interaction_type Genetic #Interaction_info | ||
| + | Regulatory #Interaction_info | ||
| + | No_interaction #Interaction_info | ||
| + | Predicted_interaction #Interaction_info | ||
| + | Physical_interaction #Interaction_info | ||
| + | Suppression #Interaction_info | ||
| + | Enhancement #Interaction_info | ||
| + | Synthetic #Interaction_info | ||
| + | Epistasis #Interaction_info | ||
| + | Mutual_enhancement #Interaction_info | ||
| + | Mutual_suppression #Interaction_info | ||
| + | Confidence Confidence_level UNIQUE Float | ||
| + | P_value UNIQUE Float | ||
| + | Log_likelihood_score UNIQUE Float | ||
| + | Paper ?Paper XREF Interaction | ||
| + | DB_info Database ?Database ?Database_field ?Accession_number | ||
| + | Remark ?Text #Evidence | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
| + | ==Unused tags== | ||
| + | |||
| + | Evidence | ||
| + | |||
| + | Confidence_level | ||
| + | |||
| + | P_value | ||
| + | |||
| + | DB_info Database | ||
Revision as of 13:44, 4 October 2010
Curator Comments/Description
Model
////////////////////////////////////////////////////////////////////////////////
//
// ?Interaction class for Andrei WBInteraction00000001
// Replaces the old interaction model. The main enhancements are information about the interactors and the phenotypes
// relevant to the interaction. For the directional interactions (tags:Regulatory, Suppression, Enhancement, Epistasis)
// the directionality of the interaction is described by the tags Effector and Effected as follows: Effector "Regulates"
// ("Suppresses", "Enhances", or "IsEpistatic To") Effected.
//
// For the rest of the interactions (the non-directional kind) Effector and Effected are considered equivalent.
//
////////////////////////////////////////////////////////////////////////////////
?Interaction Evidence #Evidence
Interactor ?Gene XREF Interaction #Interactor_info
Interaction_type Genetic #Interaction_info
Regulatory #Interaction_info
No_interaction #Interaction_info
Predicted_interaction #Interaction_info
Physical_interaction #Interaction_info
Suppression #Interaction_info
Enhancement #Interaction_info
Synthetic #Interaction_info
Epistasis #Interaction_info
Mutual_enhancement #Interaction_info
Mutual_suppression #Interaction_info
Confidence Confidence_level UNIQUE Float
P_value UNIQUE Float
Log_likelihood_score UNIQUE Float
Paper ?Paper XREF Interaction
DB_info Database ?Database ?Database_field ?Accession_number
Remark ?Text #Evidence
Proposed Changes
Unused tags
Evidence
Confidence_level
P_value
DB_info Database
