Difference between revisions of "WBConfCall 2021.09.16-Agenda and Minutes"
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== Helpdesk == | == Helpdesk == | ||
| − | + | Most issues have been answered and resolved | |
| + | |||
| + | There are a few website tickets, mainly from gmap but would be good if someone could look at the recent ones. | ||
== Variant Pipeline Addition == | == Variant Pipeline Addition == | ||
| − | Meeting was held to discuss implementation of GSoC project (Valerio, Magz) | + | Meeting was held to discuss implementation of GSoC project (Valerio, Magz, Paul, Stavros, Kimberly, Daniela, Karen) |
| − | + | * Agree to implement the code so that the functions are available to AFP etc. | |
| − | + | * Hinxton will be testing and providing feedback on results | |
| − | + | * Once optimized and tested, it could be included in the AFP tools and micropublication (as well as general variant curation from the literature) | |
| − | + | * Rishab is keen to continue, looking into the Institutional logistics of this. | |
== WormBase Parasite Release == | == WormBase Parasite Release == | ||
| Line 40: | Line 42: | ||
Draft will be circulated shortly for feedback (Paul D) | Draft will be circulated shortly for feedback (Paul D) | ||
| + | == AOB == | ||
| + | === Schema === | ||
| + | Released last week Paul D. will send Adam all the information as Adam is aware of potential necessary code changes. | ||
| − | + | === EBI FTP changes === | |
| − | + | Will CalTech be effected by EBI FTP changes (Ranjana) | |
| − | |||
| − | EBI FTP changes | ||
EBI is moving data from one compute culster to the other, which will affect FTP uploads and downloads, but should not be noticeable to external users | EBI is moving data from one compute culster to the other, which will affect FTP uploads and downloads, but should not be noticeable to external users | ||
| − | + | === CeNGen graph data patch === | |
| − | == | + | ** Needs patching for WS282 (Raymond) - Adam thinks it can be done as a patch as a hot fix after release. |
| + | ** WS282 penned for release late October however looking to release within the next week. | ||
| + | ** Patch will be applied as a hot fix. | ||
| + | ** Webteam learning the release process. | ||
| + | ** Will announce when release as have a blog post about the CeNGEN data because of community interest. | ||
Latest revision as of 16:05, 16 September 2021
Contents
Agenda and Minutes
Helpdesk
Most issues have been answered and resolved
There are a few website tickets, mainly from gmap but would be good if someone could look at the recent ones.
Variant Pipeline Addition
Meeting was held to discuss implementation of GSoC project (Valerio, Magz, Paul, Stavros, Kimberly, Daniela, Karen)
- Agree to implement the code so that the functions are available to AFP etc.
- Hinxton will be testing and providing feedback on results
- Once optimized and tested, it could be included in the AFP tools and micropublication (as well as general variant curation from the literature)
- Rishab is keen to continue, looking into the Institutional logistics of this.
WormBase Parasite Release
- Release 16 has just gone live (Dio)
https://wbparasite.wordpress.com/2021/09/06/announcing-wormbase-parasite-release-16/
- New archive site for previous releases of the site...not full functionality
- C. elegans update in Ensembl underway, for release e106
- Ranjana can tweet from WB account.
WS283 Planning
Model frozen, including all submitted change requests (Paul D)
Start 4th Oct.
- What new data are we including?
- Planning on:
- 3 sets of new variant data from CGC, PS, VC. (if available)
- NBRP major update. (if available)
- C. briggsae operon update - requiring a partial rebuild.
Future release dates need to be considered as WS283 is the last we have currently planned for.
Genetics Paper
Draft will be circulated shortly for feedback (Paul D)
AOB
Schema
Released last week Paul D. will send Adam all the information as Adam is aware of potential necessary code changes.
EBI FTP changes
Will CalTech be effected by EBI FTP changes (Ranjana) EBI is moving data from one compute culster to the other, which will affect FTP uploads and downloads, but should not be noticeable to external users
CeNGen graph data patch
- Needs patching for WS282 (Raymond) - Adam thinks it can be done as a patch as a hot fix after release.
- WS282 penned for release late October however looking to release within the next week.
- Patch will be applied as a hot fix.
- Webteam learning the release process.
- Will announce when release as have a blog post about the CeNGEN data because of community interest.
