Difference between revisions of "WBConfCall 2021.06.03-Agenda and Minutes"

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*Corrected files are available on the EBI ftp site
 
*Corrected files are available on the EBI ftp site
 
*If we haven't already, can we resync the ftp server?
 
*If we haven't already, can we resync the ftp server?
 +
* GitHub ticket: https://github.com/WormBase/website/issues/8185

Revision as of 16:18, 3 June 2021

Help Desk

Open tickets:


Agenda and Minutes

WS281 New data for the release letter

Caltech:

Hinxton (follow on):

  • Expanded collection of C. elegans comparator genomes by adding a chromosome-scale draft C. bovis assembly {PMID:32109387}, and nine further draft assemblies of newly described Caenorhabditis species {PMID:1007946} and replaced two C. remanei strains (PX356 and PX439) with animproved chromosome-scale assembly of C. remanei PX506 {PMID:32111628}.


GSoC student to work on genomic locations of Variants

  • Hinxton has a GSoC student (Rishab) who will be working on extracting the genomic location of variations from full-text papers

IWM coordination

  • Do we need to plan anything together for the upcoming IWM?

IWM 2021 WB Workshop

  • Scheduled for June 22, 2021
  • Session begins at 8:30am Pacific / 11:30am Eastern / 4:30pm UK
  • Workshop runs for 90 minutes: 4 15-minute talks followed by 30 minute Q&A session
  • Here is the submitted workshop schedule:
11:30 am (EDT) Magdalena Zarowiecki, EMBL-EBI, A whistle-stop tour of all the types of data you can find in WormBase
11:45 am (EDT) Chris Grove, California Institute of Technology, Researching transcriptional regulation using WormBase transcription factors, TF binding sites and the modENCODE data
12:00 pm (EDT) Ranjana Kishore, California Institute of Technology, Comparative genomics and disease research using Alliance of Genome Resources
12:15 pm (EDT) Daniela Raciti, California Institute of Technology, How can you contribute? Community curation and tools, and the author-first-pass (AFP) pipeline
12:30 pm (EDT) Chris Grove, California Institute of Technology, Open Discussion / Q & A

WS280 WormBase ftp resync

  • There are still some issues with the C. elegans GAF and GPI files on the WormBase ftp site that are causing the GO release to fail
  • Corrected files are available on the EBI ftp site
  • If we haven't already, can we resync the ftp server?
  • GitHub ticket: https://github.com/WormBase/website/issues/8185
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