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− | <center><b>
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− | <font size="5" color="Blue">WormBase Scientific Advisory Board Meeting
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− | [[File:Caltechlogo.gif|frame|none]]California Institute of Technology, February 3rd - 4th 2011 | + | = Meeting list = |
− | </font>
| + | [[2018_Advisory_Board_Meeting | 2018 SAB Meeting]] |
− | </b></center>
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− | __TOC__
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− | <b>
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− | ==Wednesday 2nd Feb – Pre-Meeting (WormBase central)==
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− | (AB not required to attend this session)
| + | [[2016_Advisory_Board_Meeting | 2016 SAB Meeting]] |
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− | 6:30 – 18:00</b>
| + | [[2014_Advisory_Board_Meeting | 2014 SAB Meeting]] |
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− | === Put right the World: Potential Discussion topics ===
| + | [[2013_Advisory_Board_Meeting | 2013 SAB Meeting]] |
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− | * Release cycle
| + | [[2011_Advisory_Board_Meeting | 2011 SAB Meeting]] |
− | ** Implications of less frequent releases
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− | ** Strategies for "as live" display of certain data types
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− | * Gene-structure curation
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− | ** Manual versus automatic-RNASeq-guided (and how we might do the latter)
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− | ** Which genomes should be manually curated?
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− | ** Community annotation of tierIII genomes
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− | ** Should we invest resources into "semi-automatic" annotation of 3rd party genomes?
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− | * New species
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− | ** Minimal requirements for integration into WormBase(
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− | *** Submission to ENA/Genbank? Gene-set?
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− | ** Support for "tier IV" (transcriptome-only) genomes
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− | ** Support for "in-progress" genome projects (c.f. Ensembl pre-sites)
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− | * (Re-)sequencing
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− | ** What should the elegans reference sequence be?
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− | *** Re-sequencing a standard N2 isolate?
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− | ** Handling 1000s of elegans mutant and wild isolate strain genomes?
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− | *** Representation of non-reference variants of genes/features etc.
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− | ** Chip-seq and other large datasets - where should the be stored to maximise usage but cut overhead?
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− | * (Re-)distribution of tasks within the consortium
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− | ** Array probe mapping
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− | ** RNAi target identification
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− | * Visualisation
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− | ** GBrowse: making it -seq friendly
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− | ** Interaction browser: what shall we use?
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− | ==Thursday 3rd Feb – Millikan Board Room==
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− | === 9:00 - 12:00: Overview, Website, UI ===
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− | * Introduction: Where we are; Hinxton Reorganization - (Paul Sternberg; 15 min)
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− | * Slot for new Hinxton PIs (Paul Kersey and Matt Berriman; 30 mins)
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− | * User interface
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− | ** Site usage; introduction to the new site (Todd; 30 minutes)
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− | ** Tour of the new website (Abby; 30 minutes)
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− | * Process and pathway curation and display (Karen; 10 minutes)
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− | * Data Integration/Data Mining - WormMart (Ruihua; 10 minutes)
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− | ===13:00 – 15:30 Build, Sequence curation and analysis, other nematodes===
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− | * Build, database and related things - (Kevin Howe; 30 mins)
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− | * C. elegans(+ Tier II) Manual curation and projects? - Paul D. (20 mins)
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− | * Large scale datasets (curation/modENCODE) - Gary W. (30 mins)
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− | ** microarray and SPELL -Wen C. (5 min)
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− | * Tier II genome (re)submissions -
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− | * Other genome analysis -
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− | ===15:30 - Literature Curation===
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− | * Literature curation introducton : Gary Schindelman (update on stats) - 5 minutes
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− | * Ontology Annotator
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− | ** Juancarlos Chan - general introduction of OA
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− | **Xiaodong Wang - developing interaction OA
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− | | |
− | * Picture curation : Daniela Raciti - 10 minutes
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− | * Virtual Worm Overview : Chris Grove - 2 minutes
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− | Possible topics:
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− | * Gene Function Curation - concise descriptions (update on numbers, curation approach)
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− | * Collaboration with other Databases/Projects - automation (ARRA), BioGRID, GO
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− | **GSA Arun/Karen
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− | ** Automatic Triage - Using Support Vector Machine (SVM) (Ruihua; 10 minutes)
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− | ===General Discussion===
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− | * Coordination among sites
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− | * Quality control
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− | * Outreach
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− | * Database migration community annotation
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− | <b>
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− | ==Friday 4th Feb – Millikan Board Room==
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− | </b>
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− | 8:30 – 9:00 Advisors breakfast
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− | 9:30 – 12:00 Advisors summary report
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− | 12:00 – 13:00 Lunch
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− | 13:00 – Discussion
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− | <b>(AB not required to attend this session)</b>
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− | == Arrivals/Departures ==
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− | <b>Arrive</b>
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− | * Hinxton Crew - Pasadena Tuesday afternoon/evening?
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− | <b>Depart</b>
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− | * Hinxton Crew minus Michael - Pasadena Sunday before lunch?
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− | * Michael P. - Pasadena Friday PM?
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