Difference between revisions of "Unused evidence"
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Latest revision as of 18:21, 11 November 2014
The following tags allow evidence (#Evidence in the model), but no occurrences in the WS244 actually had evidence. Possible candidates for removal in the new database?
:anatomy-function/remark (10 values, 0 evidence) :anatomy-term/term (6785 values, 0 evidence) :anatomy-term/evidence EMPTY :ao-code/remark EMPTY :antibody/gene (2753 values, 0 evidence) :antibody/remark (121 values, 0 evidence) :antibody/summary (2450 values, 0 evidence) :cell/other-name (919 values, 0 evidence -- Raymond suggests killing this class?) :cell/main-name (2939 values, 0 evidence) :cell/remark (900 values, 0 evidence) :cell/go-term EMPTY :cell-group/main-name (532 values, 0 evidence) :cell-group/other-name (25 values, 0 evidence) :cell-group/remark (98 values, 0 evidence) :cds/corresponding-protein (201723 values, 0 evidence) ***** :cds/concise-description EMPTY :cds/detailed-description EMPTY :cds/db-remark (130412 values, 0 evidence) **** :clone/evidence EMPTY :condition/remark (236 values, 0 evidence) :do-term/worm-disease-model EMPTY :expression-cluster/anatomy-term (142 values, 0 evidence) :expression-cluster/remark (402 values, 0 evidence) :expression-cluster/expr-pattern (98 present, 0 evidence) :expression-cluster/gene (599499 values, 0 evidence) **** :expression-cluster/sage-tag EMPTY :expr-pattern/gene (42983 values, 0 evidence) :expr-pattern/remark (10483 values, 0 evidence) :expr-pattern/associated-feature (54 values, 0 evidence) :expr-profile/remark (2353 values, 0 evidence) ;; NB :feature/associated-with-gene DOES have evidence... :feature/associated-with-cds (7676 values, 0 evidence) :feature/associated-with-pseudogene (16 values, 0 evidence) :feature/associated-with-variation EMPTY :feature/associated-with-operon (1 value, 0 evidence) :feature/associated-with-transposon EMPTY :feature/associated-with-transcript (8165 values, 0 evidence) :feature/score (394711 values, 0 evidence) **** :gene/corresponding-cds (202067 values, 0 evidence) **** :gene/corresponding-transcript (239936 values, 0 evidence) **** :gene/corresponding-pseudogene (3738 values, 0 evidence) :gene/corresponding-transposon (364 values, 0 evidence) :gene/concise-description (6168 values, 0 evidence) :gene/detailed-description EMPTY :gene/suppressed (361 present, 0 evidence) :go-code/remark EMPTY :homology-group/evidence EMPTY :homology-group/remark (63009 values, 0 evidence) :interaction/interaction-summary (18885 values, 0 evidence) :lab-location/remark EMPTY :life-stage/remark (8 values, 0 evidence) :locus/evidence EMPTY :locus/remark EMPTY :locus/other-name EMPTY :mass-spec-experiment/remark (41 values, 0 evidence) :microarray/remark (5 values, 0 evidence) :microarray-data/remark (3400214 values, 0 evidence) :microarray-experiment/remark (5311 values, 0 evidence) :microarray-results/cds (565920 values, 0 evidence) **** :microarray-results/remark EMPTY :microarray-results/pseudogene (6257 values, 0 evidence) :microarray-results/transcript (653674 values, 0 evidence) **** :microarray-results/gene (494487 values, 0 evidence) **** :molecule/remark EMPTY :molecule/rnai (65 values, 0 evidence) :molecule/molecule-use (158 values, 0 evidence) :motif/db-remark EMPTY :motif/go-term (27856 values, 0 evidence) :movie/remark (766 values, 0 evidence) :oligo-set/remark (5092 values, 0 evidence) :oligo-set/overlaps-cds (538652 values, 0 evidence) ****** :oligo-set/overlaps-pseudogene (5372 values, 0 evidence) :oligo-set/overlaps-transcript (619716 values, 0 evidence) ***** :paper/email EMPTY :paper/species EMPTY :paper/not-person (2417 values, 0 evidence) :paper/remark (15 values, 0 evidence) :paper/directory EMPTY :paper/person (118143 values, 0 evidence) **** :phenotype/assay (49 values, 0 evidence) :phenotype/do-term EMPTY :phenotype/go-term (199 values, 0 evidence) :phenotype/short-name EMPTY :phenotype/primary-name (2175 values, 0 evidence) :phenotype/remark (2 values, 0 evidence) :phenotype-info/not EMPTY :phenotype-info/quantity (2888 values, 0 evidence) :phenotype-info/quantity-description (573 values, 0 evidence) :phenotype-info/mixed EMPTY :picture/evidence EMPTY :picture/remark (26352 values, 0 evidence) :position-matrix/transcription-factor (141 values, 0 evidence) :position-matrix/bound-by-gene-product (30 values, 0 evidence) :position-matrix/consensus (5380 values, 0 evidence) :protein/remark (613 values, 0 evidence) :pseudogene/db-remark (3948 values, 0 evidence) :pseudogene/concise-description EMTPY :pseudogene/detailed-description EMPTY :pseudogene/provisional-description EMPTY :pseudogene/rna-pseudogene (2311 values, 0 evidence) :pseudogene/matching-cdna (164 values, 0 evidence) :rearrangement/gene-inside (1103 values, 0 evidence) :rearrangement/gene-outside (716 values, 0 evidence) :reconstruction/remark EMPTY :reference/remark EMPTY :rnai/remark (90172 values, 0 evidence) :sage-experiment/remark EMPTY :sage-tag/evidence EMPTY :sage-tag/remark EMPTY :sequence/go-term EMPTY :sequence-collection/dead (1 present, 0 evidence) :sequence-collection/suppressed (1 present, 0 evidence) :sk-map/remark (11675 values, 0 evidence) :strain/other-name (839 values, 0 evidence) :structure-data/remark EMPTY :transcript/corresponding-cds (205965 values, 0 evidence) :transcript/concise-description EMPTY :transcript/detailed-description EMPTY :transcript/provisional-description (170 values, 0 evidence) :transcript/go-term EMPTY :transcript/ignore (2 present, 0 evidence) :transgene/evidence EMPTY :transgene/remark (21 values, 0 evidence) :transposon/corresponding-cds (346 values, 0 evidence) :transposon/corresponding-pseudogene (18 values, 0 evidence) :transposon/old-name (101 values, 0 evidence) :transposon-family/remark (1 value, 0 evidence) :variation/hme0-mating-not-successful EMPTY :variation/hme1-mating-rarely-successful EMPTY :variation/hme2-mating-usually-successful EMPTY :variation/hme3-mating-always-successful EMPTY :variation/me0-mating-not-successful EMPTY :variation/me1-mating-rarely-successful EMPTY :variation/me2-mating-usually-successful EMPTY :variation/me3-mating-always-successful EMPTY :variation/acceptor (9 values, 0 evidence) :variation/donor (11 values, 0 evidence) :variation/inversion EMPTY :variation/silent EMPTY :variation/dead EMPTY :variation/missense EMPTY :variation/readthrough EMPTY :variation/phenotype-remark EMPTY :variation/expr-pattern EMPTY :variation/amber-uag EMPTY :variation/opal-uga EMPTY :variation/ochre-uaa EMPTY :wbprocess/remark (20 values, 0 evidence) :wbprocess/do-term EMPTY :wbprocess/go-term (122 values, 0 evidence) :wbprocess/gene-cluster (2 values, 0 evidence) :wbprocess/historyical-gene EMPTY :wbprocess/picture EMPTY :wbprocess/summary (77 values, 0 evidence) :wbprocess/movie EMPTY :wbprocess/interaction (1615 values, 0 evidence)