Difference between revisions of "Specifications for a Community Annotation Form"
| Line 21: | Line 21: | ||
4. ''Choose a species.'' | 4. ''Choose a species.'' | ||
| − | Autocomplete, Drop-down with predetermined values | + | Autocomplete, Drop-down with predetermined values, if not found, free text is allowed. The preferred order is (note that Homo sapiens has been taken out): |
*Caenorhabditis elegans | *Caenorhabditis elegans | ||
| + | *Caenorhabditis briggsae | ||
| + | *Pristionchus pacificus | ||
| + | *Brugia malayi | ||
| + | *Caenorhabditis brenneri | ||
| + | *Caenorhabditis japonica | ||
| + | *Caenorhabditis remanei | ||
*Caenorhabditis sp. 3 | *Caenorhabditis sp. 3 | ||
*Panagrellus redivivus | *Panagrellus redivivus | ||
*Cruznema tripartitum | *Cruznema tripartitum | ||
| − | + | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| Line 49: | Line 49: | ||
Also, once PMID is entered, form pulls up Paper information, meaning title etc etc, similar to what P2GO does; Kimberly will talk to JC about it. | Also, once PMID is entered, form pulls up Paper information, meaning title etc etc, similar to what P2GO does; Kimberly will talk to JC about it. | ||
| − | |||
==Mock-up of form with field titles and guidelines== | ==Mock-up of form with field titles and guidelines== | ||
Revision as of 18:14, 22 May 2013
Description of fields
Since this is for the community, it might be worth having a short one-line instruction for each field (shown in italics here), on top of the box for entering data:
Please see guidelines on how to write a concise description:
http://wiki.wormbase.org/index.php/How_WormBase_writes_a_concise_description
1. Enter your first name.
Free text box; required
2. Enter your last name
Free text box; required
3. Enter a contact E-mail address
Free text box; required
4. Choose a species.
Autocomplete, Drop-down with predetermined values, if not found, free text is allowed. The preferred order is (note that Homo sapiens has been taken out):
- Caenorhabditis elegans
- Caenorhabditis briggsae
- Pristionchus pacificus
- Brugia malayi
- Caenorhabditis brenneri
- Caenorhabditis japonica
- Caenorhabditis remanei
- Caenorhabditis sp. 3
- Panagrellus redivivus
- Cruznema tripartitum
5. Choose a gene gin_locus gin_synonyms gin_seqname gin_wbgene this is the priority of how genes get autocompleted
J: If what is typed does not match, it stays as free-text
6.Write a concise description for the gene you've chosen.
Concise description: A big box for free-text, similar to the 'Description Text' box in the Concise Description OA.
7. Enter a published paper reference, either a PMID, WBPaper identifier or a DOI. Please note that WormBase will not accept meeting abstracts, Gazette articles or personal communications as references.
Free-text box allowing PMID or DOI.
Also, once PMID is entered, form pulls up Paper information, meaning title etc etc, similar to what P2GO does; Kimberly will talk to JC about it.
Mock-up of form with field titles and guidelines
1. Enter your first name. This field is required.
2. Enter your last name. This field is required.
3. Enter a contact E-mail address. This field is required.
4. Choose a species.
Start typing in a species, the form will autocomplete the text. If you cannot find the species in the drop-down, please enter it manually. This field is required.
5. Choose a gene
Enter a gene name (e.g., abc-1). Sequence names (e.g., AC3.4) and WBGene IDs (e.g., WBGene00000011) are allowed. If the WormBase gene you begin typing is present in the drop-down, the form will autocomplete the text. If you cannot find the gene in the drop-down, please enter it manually.
6. Write a concise description for the gene you've chosen.
Please see guidelines on writing a concise description: http://wiki.wormbase.org/index.php/How_WormBase_writes_a_concise_description
7. Enter a published paper reference, either a PMID, WBPaper identifier, or a DOI.
Please note that WormBase will not accept meeting abstracts, gazette articles or personal communications as references.
