Difference between revisions of "Specifications for WB gpi file"
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http://wiki.geneontology.org/index.php/Final_GPAD_and_GPI_file_format#Final_format_.2809_Jan_2013.29_2 | http://wiki.geneontology.org/index.php/Final_GPAD_and_GPI_file_format#Final_format_.2809_Jan_2013.29_2 | ||
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| + | We will need to create a new file with each WormBase release. | ||
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Revision as of 18:28, 20 March 2013
These specifications are based on the documentation on the GO wiki:
We will need to create a new file with each WormBase release.
| column | name | required? | cardinality | GAF column | Example for UniProt | Example for WormBase | Tag in AceDB model |
|---|---|---|---|---|---|---|---|
| 01 | DB_Object_ID | required | 1 | 2/17 | Q4VCS5-1 | WBGene00000035 | |
| 02 | DB_Object_Symbol | required | 1 | 3 | AMOT | ace-1 | |
| 03 | DB_Object_Name | optional | 0 or 1 | 10 | Angiomotin | ||
| 04 | DB_Object_Synonym(s) | optional | 0 or greater | 11 | KIAA1071|AMOT | ACE1 | |
| 05 | DB_Object_Type | required | 1 | 12 | protein | gene | |
| 06 | Taxon | required | 1 | 13 | taxon:9606 | taxon:6239 | |
| 07 | Parent_Object_ID | optional | 0 or 1 | - | UniProtKB:Q4VCS5 | WB:WBGene00000035 | |
| 08 | DB_Xref(s) | optional | 0 or greater | - | - | UniProtKB:P38433 | |
| 09 | Gene_Product_Properties | optional | 0 or greater | - | See Note 4 below |
