Difference between revisions of "Nematode sequencing summary"
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Jump to navigationJump to search (New page: This page summarizes the sequencing efforts on nematode genomes. It is a work in progress and is not definitive.<br> '''Last update: 13 June 2008'''<br> <br> <br> {| cellspacing="1" ce...) |
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| − | This page summarizes the sequencing efforts on nematode genomes. It is a work in progress and is not definitive.<br> | + | This page summarizes the sequencing efforts on nematode genomes. It is a work in progress and is not definitive.<br> |
| − | '''Last update: 13 June 2008''' | + | '''Last update: 13 June 2008'''<br> |
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{| cellspacing="1" cellpadding="1" border="1" width="100%" | {| cellspacing="1" cellpadding="1" border="1" width="100%" | ||
| − | |+ Nematode Sequencing Status | + | |+ Nematode Sequencing Status |
|- | |- | ||
| − | | '''Species'''<br> | + | | '''Species'''<br> |
| − | | '''Status'''<br> | + | | '''Status'''<br> |
| − | | '''Assembly size'''<br> | + | | '''Assembly size'''<br> |
| − | | '''Number''' '''genes'''<br> | + | | '''Number''' '''genes'''<br> |
| − | | '''Download'''<br> | + | | '''Download'''<br> |
| '''Browser'''<br> | | '''Browser'''<br> | ||
|- | |- | ||
| − | | ''C. elegans''<br> | + | | ''C. elegans''<br> |
| − | | Annotated<br> | + | | finished; Annotated<br> |
| + | | 101 Mb in 6 chromosomes<br> | ||
| + | | <br> | ||
| + | | <br> | ||
| <br> | | <br> | ||
| + | |- | ||
| + | | ''C. briggsae''<br> | ||
| + | | 10x draft; Annotated<br> | ||
| + | | <br> | ||
| + | | <br> | ||
| + | | <br> | ||
| + | | <br> | ||
| + | |- | ||
| + | | ''C. brenneri'' | ||
| + | | 9.5x draft, initial gene calls<br> | ||
| + | | 191 Mb in 3510 supercontigs<br> | ||
| <br> | | <br> | ||
| <br> | | <br> | ||
| <br> | | <br> | ||
|- | |- | ||
| − | | ''C. | + | | ''C. japonica'' |
| − | | | + | | 6.3x draft, initial gene calls<br> |
| + | | 152 Mb in 4657 supercontigs<br> | ||
| <br> | | <br> | ||
| <br> | | <br> | ||
| <br> | | <br> | ||
| − | |||
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| − | | ''C. | + | | ''C. remanei'' |
| − | | | + | | 9.2x draft, initial gene calls<br> |
| − | | | + | | 145 Mb in 3670 supercontigs<br> |
| − | | | + | | <br> |
| − | | | + | | <br> |
| − | | | + | | <br> |
|- | |- | ||
| − | | '' | + | | ''P. pacificus'' |
| − | | | + | | 8.9x draft, initial gene calls <br> |
| − | | | + | | 169 Mb in 5106 supercontigs<br> |
| − | | | + | | <br> |
| − | | | + | | <br> |
| − | | | + | | <br> |
|- | |- | ||
| − | + | | ''B. malayi'' | |
| − | + | | 8.9x draft, genes annotated<br> | |
| − | + | | <br> | |
| − | + | | <br> | |
| − | + | | <br> | |
| − | + | | <br> | |
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| − | |||
| − | |||
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| − | |||
| − | | ''B. malayi'' | ||
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| − | | | ||
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<br> | <br> | ||
Revision as of 17:26, 13 June 2008
This page summarizes the sequencing efforts on nematode genomes. It is a work in progress and is not definitive.
Last update: 13 June 2008
| Species |
Status |
Assembly size |
Number genes |
Download |
Browser |
| C. elegans |
finished; Annotated |
101 Mb in 6 chromosomes |
|||
| C. briggsae |
10x draft; Annotated |
||||
| C. brenneri | 9.5x draft, initial gene calls |
191 Mb in 3510 supercontigs |
|||
| C. japonica | 6.3x draft, initial gene calls |
152 Mb in 4657 supercontigs |
|||
| C. remanei | 9.2x draft, initial gene calls |
145 Mb in 3670 supercontigs |
|||
| P. pacificus | 8.9x draft, initial gene calls |
169 Mb in 5106 supercontigs |
|||
| B. malayi | 8.9x draft, genes annotated |
