Person

Form URL

http://mangolassi.caltech.edu/~postgres/cgi-bin/cecilia/person_editor.cgi (sandbox for testing)

New postgreSQL Tables

table 'two' does not have history, only has joinkey (two#), two value (integer), two_timestamp (timestamp)

all other tables have joinkey (two#), two_order (integer), two_

(data -- text), two_curator (two# -- text), two_timestamp (timestamp) :

• two_firstname
• two_middlename
• two_lastname
• two_standardname
• two_street
• two_city
• two_state
• two_post
• two_country
• two_institution
• two_old_institution
• two_old_inst_date
• two_mainphone
• two_labphone
• two_officephone
• two_otherphone
• two_fax
• two_email
• two_old_email
• two_old_email_date
• two_pis
• two_lab
• two_oldlab
• two_left_field
• two_unable_to_contact
• two_privacy
• two_aka_firstname
• two_aka_middlename
• two_aka_lastname
• two_webpage
• two_wormbase_comment
• two_hide
• two_status
• two_mergedinto
• two_acqmerge
• two_comment
• two_usefulwebpage

What is this section for ?

Current tables: These are forms, not tables, and aren't these the ones listed below under Todo for changing ? -- J http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/confirm_paper.cgi http://tazendra.caltech.edu/~postgres/cgi-bin/cecilia/two_display.cgi http://tazendra.caltech.edu/~postgres/cgi-bin/cecilia/twoeditor.cgi http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/paper_display.cgi http://tazendra.caltech.edu/~postgres/cgi-bin/paper_editor.cgi? http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/person.cgi http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/person_lineage.cgi

Para asociar a single match: You're missing /home/ in the first three, and the / in the last one -- J cecilia/work/UPLOAD/new-upload ./connect_single_match_authors_and_get_histogram.pl

Verificar papeles by labs and lineage cecilia/work/UPLOAD/new-upload ./verify_by_labs_or_lineage.pl

Email Persons for verification cecilia/work/UPLOAD/new-upload ./email_connected_authors.pl

Para upload acedb: home/acedb/cecilia/citace_upload/ ./get_pap_person_ace.pl > persons.ace

Changes between old and new tables

• Adding history tables as h_two_...
• Removing two_apu_ tables, two_groups
• Adding two_usefulwebpage, two_old_inst_date, two_old_email_date
• Changing two_comment into normal table with order
• Changing old_timestamp column to two_curator (all values will be 'two1')

Questions

Please confirm that no one uses this form http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/confirm_paper.cgi In the last year 111 IPs have used it (mostly once) but a couple of them over 100 each. If you don't use it, is it in the emails you send out or in the submit forms in WormBase ? -- J answer Please keep form, must be the one linking to old papers associated but not verified -- Ceci Sounds good, added to list of forms to check -- J thanks ceci

1681 two_middlename without value, is that okay ? SELECT * FROM two_middlename WHERE two_middlename = ' '; <-- no space in between the singlequotes --J answer It was from when we thoght that a data was needed in tag, please delete if not needed -- Ceci.

1004 two_middlename with NULL order, value, old_timestamp, what should we do with that ? SELECT * FROM two_middlename WHERE two_order IS NULL;

answer i've been adding aka_middlename = NULL to every aka entry, if it is not necessary them we can delete it, but if it is necessary please keep it. Talk tomorrow? Ceci. I am also fixing some typos showing searching in new Person editor Ceci I don't know if you need it to say 'NULL' or not, but I thought you were never supposed to have blank values, you can skype me whenever you want -- J will talk in person about all middle/aka names, empty values

two427 had under wormbase_comment :

• two427 | 1 | Due to illness, please get in touch with: Mark Edgley (edgley@interchange.ubc.ca) for gene knockout inquiries. Teresa Rogalski (rogalski@zoology.ubc.ca) for muscle lab matters. 2003-03-07 18:36:25.089309-08 | 2003-03-19 11:38:57.295736-08 |
• two427 | 1 | Lab:DM or VC | 2003-03-10 16:23:56.877045-08 | 2003-03-19 11:38:57.295736-08
• two427 | 2 | DM his own lab and VC head of the KO | 2008-01-31 00:00:00-08 | 2008-01-30 10:04:25.884154-08

Which has two order '1', I've deleted the first one, if you want to add it again as order '3' -- J. answer Deleted OK, thanks Ceci

Please comment on these changes :

• I've added history tables, and changed the postgres tables to store the curator in the 4th column where the old_timestamp used to be. Updating data updates the data table with current timestamp ; removes any history data for that table-joinkey-order in the last 10 minutes, and inserts with current timestamp. answer OK Ceci

• Street field always has at least 4 fields. answer YES ceci

• name and aka_name now show first/middle/last in a row with timestamp below them. answer Like it Ceci

• old_email shows data from old_email_date horizontally with timestamp. answer OK ceci

• old_institution shows old_inst_date data, and webpage shows usefulwebpage vertically because I assume you need more space, if you'd rather display them horizontally like old_email, let me know. answer OK ceci

• All changes to the person editing section of the person editor are done, please let me know if I overlooked something. answer looks ok, will look more in detail, thanks Juancarlos ceci Cool, let me know. Thanks -- J two_comment is missing ceci added - J' thanks, c

• In the Search Paper (to create people from XML) section, do you want to see input fields to create new people for authors that are already verified 'YES' ? Right now people that are verified 'YES' have a grey background, if you don't want to see the inputs, do you still want the grey background ? Probably easier to talk about this in person / skype. Some papers I tried were 00003865 00026893 -- J wow thanks, looks really great, will look in more detail. Yes talk in person, lots of new stuffs, when do you have time? I have to be in Pasadena on Friday, is that OK with you? I like the grey part. Paper 00026893 is showing aid77392 Davis J - xml Jerel C. Davis - 1 matches two4351 (Ralph E. Davis) -> Are matches to last names even when it doesn't match first initial or first name? ceci

To Do

Check these forms / scripts :

• /home/postgres/public_html/cgi-bin/cecilia/two_display.cgi
• /home/postgres/public_html/cgi-bin/cecilia/twoeditor.cgi
• /home/postgres/public_html/cgi-bin/paper_editor.cgi
• /home/postgres/work/get_stuff/for_paul/curation_stats/wbperson_creation_stats/get_recent.pl
• /home/azurebrd/public_html/cgi-bin/forms/paper_display.cgi
• /home/azurebrd/public_html/cgi-bin/forms/person.cgi
• /home/azurebrd/public_html/cgi-bin/forms/person_lineage.cgi
• /home/azurebrd/public_html/cgi-bin/forms/confirm_paper.cgi
• /home/azurebrd/work/parsings/authorperson/citaceLineage/update_twos_in_two_lineage.pl
• /home/cecilia/UPLOAD/new-upload/connect_single_match_authors_and_get_histogram.pl
• /home/cecilia/UPLOAD/new-upload/verify_by_labs_or_lineage.pl
• /home/cecilia/UPLOAD/new-upload/email_connected_authors.pl
• /home/cecilia/work/gaps_in_twos/get_recent.pl
• /home/acedb/cecilia/citace_upload/get_pap_person_ace.pl

Work in progress c Paper - Person track

I'd like to have: Showing only: papers flagged from Person curation by Kimberly. Ignore: For funtional annotations only, Invalid papers

WBPaper00000000 identifier link_to_paper_editor curated What's curated ? -- J