View source for GSA-GO Linking Summary Tables

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==Links by GSA Paper ID==
===110338===
{| {{table border ="1"}}
| align="center" style="background:#f0f0f0;"|'''GSA Paper ID'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in GO'''
| align="center" style="background:#f0f0f0;"|'''Instance in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Synonym match, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Ontology Aspect (P, F, C)'''
| align="center" style="background:#f0f0f0;"|'''Larger Phrase in Abstract, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Best Possible GO Link, if different'''
| align="center" style="background:#f0f0f0;"|'''Assessment of Existing Link (Y, N, G(ray area))'''
| align="center" style="background:#f0f0f0;"|'''Comments'''
| align="center" style="background:#f0f0f0;"|'''Other Actions'''
|-
|110338||male meiosis||GO:0007140 male meiosis||1||||P||||||Y(kv); since female meiosis is missed, link to meiosis- not male or female, link not wrong but link should be changed (cg, dr, ky), ok (rk)||missed GO:0007143 female meiosis (kv)|||
|-
|110338||chromosome segregation||GO:0007059 chromosome segregation||1||||P||sex chromosome segregation|||GO:0016321 female meiosis chromosome segregation, GO:0007060 male meiosis chromosome segregation||Y(kv), ok (c,k,r,d)||Can we link out to more than one term? (kv)||Ontology development? (kv)
|-
|110338||prophase||GO:0051324 prophase||1||||P||meiotic prophase||GO:0007128 meiotic prophase I, GO:0007136 meiotic prophase II||Y(kv), fine (c,k,r,d)||Not clear which meiotic prophase the authors mean and there is no general term for meiotic prophase. (kv)||Add meiotic prophase to GO? (kv)
|-
|110338||apoptosis||GO:0006915 apoptosis||1||||P||germ-line apoptosis||||Y(kv), fine (all)||||Ontology development? - germline vs somatic, if mechanism is different (kv)
|-
|110338||signaling||GO:0023052 signaling||1|||||P||checkpoint signaling||GO:0072411 signal transduction involved in meiotic cell cycle checkpoint||Y(kv), No (all), this term needs to be removed from the list||Maybe even GO:0072461 response to meiotic recombination checkpoint signal||
|-
|110338||oogenesis||GO:0048477 oogenesis||1||||P||||||Y(kv)(all)||||
|-
|110338||spermatogenesis||GO:0007283 spermatogenesis||1||||P||||||Y(kv)(all)||||
|-
|110338||oogenesis||GO:0048477 oogenesis||2||||P||||||Y(kv)(all)||||
|-
|110338||X chromosome||GO:0000805 X chromosome||1||||C||||||Y(kv)(all)||need to add plural form to entity lists(cg)||
|-
|110338||X chromosome||GO:0000805 X chromosome||2||||C||||||Y(kv)(all)||||
|-
||110338||synapsis||GO:0007129 synapsis||1||||P||self-synapsis||||Y(kv)(all)||||Broaden GO definition? (kv)
|-
||110338||apoptosis||GO:0006915 apoptosis||1||||P||||||Y(kv)(all)||||
|-
||110338||chromatin||GO:0000785 chromatin||1||||C||||GO:0000790 nuclear chromatin||Y(kv)(all)||||
|-
||110338||gene expression||GO:0010467 gene expression||1||||P||X-linked gene expression||GO:0009299 mRNA transcription||Y(kv)(all)||||
|-
||110338||chromatin||GO:0000785 chromatin||2||||C||||GO:0000790 nuclear chromatin||Y(kv)(all)||||
|-
||110338||signaling||GO:0023052 signaling||2||||P||checkpoint signaling||GO:0072411 signal transduction involved in meiotic cell cycle checkpoint||Y(kv); get rid of(all)||Maybe even GO:0072461 response to meiotic recombination checkpoint signal||
|-
|}

===123323===
{| {{table border ="1"}}
| align="center" style="background:#f0f0f0;"|'''GSA Paper ID'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in GO'''
| align="center" style="background:#f0f0f0;"|'''Instance in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Synonym match, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Ontology Aspect (P, F, C)'''
| align="center" style="background:#f0f0f0;"|'''Larger Phrase in Abstract, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Best Possible GO Link, if different'''
| align="center" style="background:#f0f0f0;"|'''Assessment of Existing Link (Y, N, G(ray area))'''
| align="center" style="background:#f0f0f0;"|'''Comments'''
| align="center" style="background:#f0f0f0;"|'''Other Actions'''
|-
|123323||diapause||GO:0030431 sleep||1||related||P||entry in the facultative dauer diapause stage||GO:0043053 dauer entry ||N(kv), N (c,d,r,k)|||||
|-
|123323||signaling||GO:0023052 signaling||1||||P||DAF-2/Insulin receptor (InsR) signaling||GO:0008286 insulin receptor signaling pathway||Y(kv); N (c,d,r,k)||Maybe even GO:0035558 phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling||
|-
|123323||regulation||GO:0065007 biological regulation||1||broad||P||developmental and physiological regulation events||GO:0050793 regulation of developmental process, GO:0050789 regulation of biological process||Y(kv); N not specific enough(c,d,r,k)||regulation of physiological process is an exact synonym for regulation of biological process||
|-
|123323||signaling||GO:0023052 signaling||2||||P||DAF-16/FOXO-dependent branch of the insulin-like signaling||GO:0008286 insulin receptor signaling pathway||Y(kv); remove from entity list (c,d,r,k)||Maybe even GO:0035558 phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling||
|-
|123323||formation||GO:0009058 biosynthetic process||1||exact||P||dauer formation||GO:0043053 dauer entry||N(kv); remove and link to broader dauer term (c,d,r,k)||||
|-
|123323||insulin-like growth factor||GO:0005159 insulin-like growth factor receptor binding||1||narrow||F||insulin/insulin-like growth factor (IGF)||||Y(kv), OK(c, r),(d,k)||||
|-
|}

===123992===
{| {{table border ="1"}}
| align="center" style="background:#f0f0f0;"|'''GSA Paper ID'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in GO'''
| align="center" style="background:#f0f0f0;"|'''Instance in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Synonym match, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Ontology Aspect (P, F, C)'''
| align="center" style="background:#f0f0f0;"|'''Larger Phrase in Abstract, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Best Possible GO Link, if different'''
| align="center" style="background:#f0f0f0;"|'''Assessment of Existing Link (Y, N, G(ray area))'''
| align="center" style="background:#f0f0f0;"|'''Comments'''
| align="center" style="background:#f0f0f0;"|'''Other Actions'''
|-
|123992||cell||GO:0005623 cell||1||||C||L3 cell fates||||Y(kv); N(c,d,r,k)|||Link out to life stage for 'L3'?  Also, see below.||
|-
|123992||cell||GO:0005623 cell||2||||C||L3 cell fate||||Y(kv); N(c,d,r,k)|||Link out to life stage for 'L3'?  Also, see below.||
|-
|123992||formation||GO:0009058 biosynthetic process||1||exact||P||dauer larva formation||GO:0043053 dauer entry or GO:0040024 dauer larval development||N(kv); N(c,d,r,k)||||
|-
|123992||formation||GO:0009058 biosynthetic process||2||exact||P||dauer formation decision||GO:0043053 dauer entry||N(kv); (c,d,r,k)||||
|-
|123992||cell||GO:0005623 cell||3||||C||regulate stage-specific cell fate decisions||||G(kv); (c,d,r,k)||This link is not incorrect, but like above, 'cell' in this context is part of a larger concept of cell fate specification.  There is a GO term, GO:0001708 cell fate specification. Would it be appropriate to link that term instead?||
|- 
|123992||formation||GO:0009058 biosynthetic process||3||exact||P||regulate dauer formation||GO:0043053 dauer entry||N(kv); (c,d,r,k)|||||Need a new regulation term in GO for dauer entry?
|-
|}

===128389===
{| {{table border ="1"}}
| align="center" style="background:#f0f0f0;"|'''GSA Paper ID'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in GO'''
| align="center" style="background:#f0f0f0;"|'''Instance in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Synonym match, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Ontology Aspect (P, F, C)'''
| align="center" style="background:#f0f0f0;"|'''Larger Phrase in Abstract, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Best Possible GO Link, if different'''
| align="center" style="background:#f0f0f0;"|'''Assessment of Existing Link (Y, N, G(ray area))'''
| align="center" style="background:#f0f0f0;"|'''Comments'''
| align="center" style="background:#f0f0f0;"|'''Other Actions'''
|-
|128389||ligand||GO:0005488 binding||1||narrow||F||||GO:0005102 receptor binding or GO:0005112 Notch binding||Y(kv,d);N(c,r,k)|||||
|-
||128389||cell||GO:0005623 cell||1||||C||vulval precursor cell (VPC) fate patterning||GO:0072327 vulval cell fate specification||G(kv);N(c,d,r,k)||Cell in this context is part of a more specific biological process term.||
|-
|128389||EGFR||GO:0005006 epidermal growth factor-activated receptor activity||1||exact||F||activation of EGFR/Ras/MAPK by the inductive signal||GO:0035559 MAPKKK cascade involved in epidermal growth factor receptor signaling||G(kv); Y(c,d,r,k)||Function term contained within a process is the only link; we should link to the process, too.  Note also that we could link to GO:0003924 GTPase activity for Ras.||
|-
|128389||MAPK||GO:0004674 protein serine/threonine kinase activity||1||related||F||activation of EGFR/Ras/MAPK by the inductive signal||GO:0035559 MAPKKK cascade involved in epidermal growth factor receptor signaling||G(kv); (c,d,r,k)||Function term contained within a process is the only link; we should link to the process, too.  Note also that we could link to GO:0003924 GTPase activity for Ras.||
|-
|128389||vulval development||GO:0040025 vulval development||1||||P||||||Y(kv); (c,d,r,k)||||
|-
|128389||signaling||GO:0023052 signaling||1||||P||lateral signaling||GO:0046331 lateral inhibition||Y(kv); N(c,d,r,k)||||Add synonym to GO.
|- 
|128389||MAPK||GO:0004674 protein serine/threonine kinase activity||2||related||F||MAPK-dependent phosphorylation of LIN-1||GO:0006468 protein phosphorylation||G(kv); Y(c,d,r,k)||Function term contained within a larger process concept.||
|-
|128389||phosphorylation||GO:0016310 phosphorylation||1||||P||MAPK-dependent phosphorylation of LIN-1||GO:0006468 protein phosphorylation||Y(kv,c,d,r,k)||Would be best to have the more specific protein phosphorylation term.||
|-
|128389||transcription||GO:0006351 transcription, DNA-dependent||1||broad||P||transcription of lag-2||GO:0042789 mRNA transcription from RNA polymerase II promoter||Y(kv,c,d,r,k)||||
|-
|}

===128421===
{| {{table border ="1"}}
| align="center" style="background:#f0f0f0;"|'''GSA Paper ID'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in GO'''
| align="center" style="background:#f0f0f0;"|'''Instance in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Synonym match, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Ontology Aspect (P, F, C)'''
| align="center" style="background:#f0f0f0;"|'''Larger Phrase in Abstract, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Best Possible GO Link, if different'''
| align="center" style="background:#f0f0f0;"|'''Assessment of Existing Link (Y, N, G(ray area))'''
| align="center" style="background:#f0f0f0;"|'''Comments'''
| align="center" style="background:#f0f0f0;"|'''Other Actions'''
|-
|128421||development||GO:0032502 developmental process||1||narrow||P||||||Y(kv,c,d,r,k)|||||
|-
|128421||cell||GO:0005623 cell||1||||C||cell fate||||Y(kv); N(c,d,r,k)||part of broader concept of cell fate|||
|-
|128421||apoptosis||GO:0006915 apoptosis||1||||P||||||Y(kv,c,d,r,k)|||||
|-
|128421||transcription||GO:0006351 transcription, DNA-dependent||1||broad||P||E2F transcription factors||GO:0000981 sequence-specific DNA binding RNA polymerase II transcription factor activity AND GO:0001076 RNA polymerase II transcription factor binding transcription factor activity||N(kv,c,d,r,k)||The phrase should link out to a function, instead of process, term. Make it a rule to link to transcription factor activity (c,d,r,k).|||
|-
|128421||cell cycle||GO:0007049 cell cycle||1||||P||regulators of the cell cycle and apoptosis||GO:0051726 regulation of cell cycle ??||Y(kv,c,d,r,k)|||||
|-
|128421||apoptosis||GO:0006915 apoptosis||2||||P||regulators of the cell cycle and apoptosis||GO:0042981 regulation of apoptosis ??||Y(kv,c,d,r,k)|||||
|-
|128421||cell||GO:0005623 cell||2||||C||cell-type specific context||||Y(kv); N(c,d,r,k)||part of broader concept|||
|-
|128421||transcription||GO:0006351 transcription, DNA-dependent||2||||P||regulate transcription of the egl-1 BH3-only cell death gene||GO:0006357 regulation of transcription from RNA polymerase II promoter||Y(kv,c,d,r,k)||||
|-
|128421||cell death||GO:0008219 cell death||1||||P||egl-1 BH3-only cell death gene||||Y(kv),c,d,r,k)||part of larger concept of cell death gene||
|-
|128421||cell||GO:0005623 cell||3||||C||to determine cell fate during development||GO:0001709 cell fate determination||N(kv,c,d,r,k)||cell fate commitment, determination, specification sometimes used interchangeably in C. elegans literature, but GO has specific definitions based on classical embryological expts||
|-
|128421||development||GO:0032502 developmental process||2||narrow||P||||||Y(kv,c,d,r,k)|||||
|}

===128512===
{| {{table border ="1"}}
| align="center" style="background:#f0f0f0;"|'''GSA Paper ID'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in GO'''
| align="center" style="background:#f0f0f0;"|'''Instance in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Synonym match, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Ontology Aspect (P, F, C)'''
| align="center" style="background:#f0f0f0;"|'''Larger Phrase in Abstract, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Best Possible GO Link, if different'''
| align="center" style="background:#f0f0f0;"|'''Assessment of Existing Link (Y, N, G(ray area))'''
| align="center" style="background:#f0f0f0;"|'''Comments'''
| align="center" style="background:#f0f0f0;"|'''Other Actions'''
|-
|128512||receptor||GO:0004872 receptor activity||1||||F||two classes of G protein-coupled receptor (D1-like and D2-like)||GO:0001590 dopamine D1 receptor activity, GO:0001670 dopamine D2 receptor activity||Y(kv,c,d,r,k)||there is also a parent term of the more specific receptors||Add G protein-coupled receptor activity as a synonym in GO
|-
|128512||signaling||GO:0023052 signaling||1||||P||signaling by these coexpressed receptors||GO:0007212 dopamine receptor signaling pathway||Y(kv); N (c,d,r,k)||||
|-
|128512||motor||GO:0003774 motor activity||1||||F||cholinergic ventral-cord motor neurons||||N(kv,c,d,r,k)- would be linked to motor neuron wbterm||Best link would be to an anatomy term||
|-
|128512||signaling||GO:0023052 signaling||2||||P||dopamine signaling||GO:0007212 dopamine receptor signaling pathway||Y(kv);N(c,d,r,k)||||
|-
|128512||signaling||GO:0023052 signaling||3||||P||defects in these dopamine-specific behaviors were caused by abnormal signaling||GO:0007212 dopamine receptor signaling pathway||Y(kv); N(c,d,r,k)||this might be a stretch||
|-
|128512||motor||GO:0003774 motor activity||2||||F||cholinergic motor neurons||||N(kv,c,d,r,k)||Best link would be to an anatomy term||
|-
|128512||motor||GO:0003774 motor activity||3||||F||cholinergic motor neurons||||N(kv,c,d,r,k)||Best link would be to an anatomy term||
|-
|128512||signaling||GO:0023052 signaling||4||||P||the sensitivity of dopamine-signaling mutants||GO:0007212 dopamine receptor signaling pathway||Y(kv,c,d,r,k)||if we were to link to anything here, dopamine signaling seems more appropriate||
|-
|128512||acetylcholinesterase||GO:0003990 acetylcholinesterase activity||1||||F||acetylcholinesterase inhibitor aldicarb||||Y(kv,c,d,r,k)||||Also link out to the molecule?
|-
|128512||signaling||GO:0023052 signaling||5||||P||D2 signaling||GO:0007212 dopamine receptor signaling pathway||Y(kv), N(c,d,r,k)||||add specific D1 and D2 signaling pathway terms to GO
|-
|128512||motor||GO:0003774 motor activity||4||||F||cholinergic motor neurons||||N(kv,c,d,r,k)||Best link would be to an anatomy term||
|-
|128512||signaling||GO:0023052 signaling||6||||P||D1 signaling||GO:0007212 dopamine receptor signaling pathway||Y(kv), N (c,d,r,k)||||add specific D1 and D2 signaling pathway terms to GO
|-
|128512||motor||GO:0003774 motor activity||5||||F||cholinergic motor neurons||||N(kv); N(c,d,r,k)||Best link would be to an anatomy term||
|-
|}

===129064===
{| {{table border ="1"}}
| align="center" style="background:#f0f0f0;"|'''GSA Paper ID'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in GO'''
| align="center" style="background:#f0f0f0;"|'''Instance in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Synonym match, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Ontology Aspect (P, F, C)'''
| align="center" style="background:#f0f0f0;"|'''Larger Phrase in Abstract, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Best Possible GO Link, if different'''
| align="center" style="background:#f0f0f0;"|'''Assessment of Existing Link (Y, N, G(ray area))'''
| align="center" style="background:#f0f0f0;"|'''Comments'''
| align="center" style="background:#f0f0f0;"|'''Other Actions'''
|-
|129064||gene expression||GO:0010467 gene expression||1||||P||||||Y(kv,c,d,r,k)||||
|-
|129064||gene expression||GO:0010467 gene expression||1||||P||left/right asymmetric gene expression programs of two gustatory neurons||||Y(kv,c,d,r,k)||||
|-
|129064||transcription||GO:0006351 transcription, DNA-dependent||1||broad||P||C2H2 zinc-finger transcription factors||GO:0000981 sequence-specific DNA binding RNA polymerase II transcription factor activity AND GO:0001076 RNA polymerase II transcription factor binding transcription factor activity||N(kv,c,d,r,k)||This should link to an MF term.||
|-
|}

===129486===
{| {{table border ="1"}}
| align="center" style="background:#f0f0f0;"|'''GSA Paper ID'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in GO'''
| align="center" style="background:#f0f0f0;"|'''Instance in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Synonym match, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Ontology Aspect (P, F, C)'''
| align="center" style="background:#f0f0f0;"|'''Larger Phrase in Abstract, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Best Possible GO Link, if different'''
| align="center" style="background:#f0f0f0;"|'''Assessment of Existing Link (Y, N, G(ray area))'''
| align="center" style="background:#f0f0f0;"|'''Comments'''
| align="center" style="background:#f0f0f0;"|'''Other Actions'''
|-
|129486||development||GO:0032502 developmental process||1||narrow||P||animal development||GO:0007275 multicellular organism development||Y(kv,c,d,r,k)||||
|-
|129486||morphogenesis||GO:0009653 anatomical structure morphogenesis||1||exact||P||morphogenesis genes||||Y(kv,c,d,r,k)||||
|-
|129486||morphogenesis||GO:0009653 anatomical structure morphogenesis||2||exact||P||morphogenesis mechanisms||||Y(kv,c,d,r,k)||||
|-
|129486||morphogenesis||GO:0009653 anatomical structure morphogenesis||3||exact||P||an example of morphogenesis||||Y(kv,c,d,r,k)||||
|-
|129486||gastrulation||GO:0007369 gastrulation||1||||P||an example of morphogenesis, gastrulation||||Y(kv,c,d,r,k)||||
|-
|129486||RNA interference||GO:0016246 RNA interference||1||||P||||||Y(kv,c,d,r,k)||||
|-
|129486||RNAi||GO:0016246 RNA interference||1||exact||P||||||Y(kv,c,d,r,k)||||
|-
|129486||gastrulation||GO:0007369 gastrulation||2||||P||gastrulation-sensitized double-mutant background||||Y(kv,c,d,r,k)||||
|-
|129486||gastrulation||GO:0007369 gastrulation||3||||P||normal gastrulation in a nonsensitized background||||Y(kv,c,d,r,k)||||
|-
|129486||ubiquitin ligase||GO:0004842 ubiquitin-protein ligase activity||1||||F||||||Y(kv,c,d,r,k)||||
|-
|129486||gastrulation||GO:0007369 gastrulation||4||||P||||||Y(kv,c,d,r,k)||||
|-
|129486||RNAi||GO:0016246 RNA interference||2||exact||P||RNAi-based enhancer screen||||Y(kv,c,d,r,k)|||
|-
|}

===130450===
{| {{table border ="1"}}
| align="center" style="background:#f0f0f0;"|'''GSA Paper ID'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in GO'''
| align="center" style="background:#f0f0f0;"|'''Instance in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Synonym match, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Ontology Aspect (P, F, C)'''
| align="center" style="background:#f0f0f0;"|'''Larger Phrase in Abstract, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Best Possible GO Link, if different'''
| align="center" style="background:#f0f0f0;"|'''Assessment of Existing Link (Y, N, G(ray area))'''
| align="center" style="background:#f0f0f0;"|'''Comments'''
| align="center" style="background:#f0f0f0;"|'''Other Actions'''
|-
|130450||aging||GO:0007568 aging||1||||P||reproductive aging||GO:0010259 multicellular organismal aging||Y(kv,c,d,r), ok but would prefer more specific term(k)||||Ontology development.
|-
|130450||aging||GO:0007568 aging||2||||P||aging of specific somatic tissues||GO:0010259 multicellular organismal aging||Y(kv,c,d,r,k), ok but would prefer more specific term(k)||||Ontology development.
|-
|130450||aging||GO:0007568 aging||3||||P||somatic aging||GO:0010259 multicellular organismal aging||Y(kv,c,d,r), ok but would prefer more specific term(k)||||Ontology development.
|-
|130450||pharyngeal pumping||GO:0043050 pharyngeal pumping||1||||P||periods of pharyngeal pumping||||Y(kv,c,d,r,k)||||
|-
|130450||kinase||GO:0016301 kinase activity||1||||F||phosphatidylinositol-3-kinase||GO:0016303 1-phosphatidylinositol-3-kinase activity||Y(kv); N(c,d,r,k):should be linked as PI3K ||Note that GO has a parent term GO:0035004 phosphatidylinositol 3-kinase activity, but that PI3K is an exact synonym of GO:0016303||Add synonym to GO.
|-
|130450||PI3K||GO:0016303 1-phosphatidylinositol-3-kinase activity||1||||F||||||Y(kv,c,d,r,k)||Note that GO has a parent term GO:0035004 phosphatidylinositol 3-kinase activity, but that PI3K is an exact synonym of GO:0016303||
|-
|130450||insulin-like growth factor||GO:0005159 insulin-like growth factor receptor binding||1||||F||insulin/insulin-like growth factor-1 (IGF-1) signaling pathway OR phosphatidylinositol-3-kinase (PI3K) that functions in the insulin/insulin-like growth factor-1 (IGF-1) signaling pathway||GO:0008286 insulin receptor signaling pathway OR GO:0035558 phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling||N(kv);G(d,k);Y(c,r)||This links to a function term, but the larger phrase should link to the process term.|||
|-
|130450||signaling pathway||GO:0007165 signal transduction||1||related||P||insulin/insulin-like growth factor-1 (IGF-1) signaling pathway OR phosphatidylinositol-3-kinase (PI3K) that functions in the insulin/insulin-like growth factor-1 (IGF-1) signaling pathway||GO:0008286 insulin receptor signaling pathway OR GO:0035558 phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling||Y(kv,c,d); G but remove in this context(r); N(k)|||||
|-
|130450||pharyngeal pumping||GO:0043050 pharyngeal pumping||2||||P||extensions of the pharyngeal pumping and body movement spans||||Y(kv,c,d,r,k)||||
|-
|130450||aging||GO:0007568 aging||4||||P||reproductive aging||GO:0010259 multicellular organismal aging||Y(kv,c,d,r), ok but would prefer more specific term(k)||||Ontology development.
|-
|130450||regulation||GO:0065007 biological regulation||1||broad||P||genetic regulation of age-related degenerative changes in somatic and reproductive tissues||GO:0050789 regulation of biological process||Y(kv); remove regulation from the entity list it is too general of a term(c,r,d,k)||||Needs ontology development.
|-
|}

===131227===
{| {{table border ="1"}}
| align="center" style="background:#f0f0f0;"|'''GSA Paper ID'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Linked Term in GO'''
| align="center" style="background:#f0f0f0;"|'''Instance in Abstract'''
| align="center" style="background:#f0f0f0;"|'''Synonym match, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Ontology Aspect (P, F, C)'''
| align="center" style="background:#f0f0f0;"|'''Larger Phrase in Abstract, if applicable'''
| align="center" style="background:#f0f0f0;"|'''Best Possible GO Link, if different'''
| align="center" style="background:#f0f0f0;"|'''Assessment of Existing Link (Y, N, G(ray area))'''
| align="center" style="background:#f0f0f0;"|'''Comments'''
| align="center" style="background:#f0f0f0;"|'''Other Actions'''
|-
|131227||RhoGEF||GO:0005089 Rho guanyl-nucleotide exchange factor activity||1||exact||F||||||Y(kv);N, the first RhoGEF is fine, we would remove all links to it when it is part of a specific protein(c,r,d,k)||||
|-
|131227||axon guidance||GO:0007411 axon guidance||1||||P||||||Y(kv,c,r,k,d)||||
|-
|131227||cell migration||GO:0016477 cell migration||1||||P||||||Y(kv,c,r,k,d)||||
|-
|131227||phagocytosis||GO:0006909 phagocytosis||1||||P||||||Y(kv,c,r,k,d)||||
|-
|131227||neurotransmission||GO:0007268 synaptic transmission||1||related||P||||||Y(kv,c,r,k,d)||||
|-
|131227||GTPase||GO:0003924 GTPase activity||1||||F||Rac or Rho GTPase subfamilies||||Y(kv,c,r,k,d); need to add plural form||Note that Rho small monomeric GTPase activity is a narrow synonym, but Rac is not.||Add Rac as a narrow synonym.
|-
|131227||RhoGEF||GO:0005089 Rho guanyl-nucleotide exchange factor activity||2||exact||F||a Rac-specific RhoGEF-1 domain||||Y(kv), see notes above||What about linking out to InterPro or Pfam protein domain databases?||
|-
|131227||RhoGEF||GO:0005089 Rho guanyl-nucleotide exchange factor activity||3||exact||F||a Rho-specific RhoGEF-2 domain||||Y(kv), see notes above||What about linking out to InterPro or Pfam protein domain databases?||
|-
|131227||RhoGEF, see notes above||GO:0005089 Rho guanyl-nucleotide exchange factor activity||4||exact||F||RhoGEF-2 isoform||||Y(kv)||||
|-
|131227||RhoGEF, see notes above||GO:0005089 Rho guanyl-nucleotide exchange factor activity||5||exact||F||RhoGEF-2 isoform||||Y(kv)||||
|-
|131227||locomotion||GO:0040011 locomotion||1||||P||normal rates of locomotion||||Y(kv,c,r,d,k)||||
|-
|131227||regulation of locomotion||GO:0040012 regulation of locomotion||1||||P||||||Y(kv,c,r,d,k)||||
|-
|131227||regulation||GO:0065007 biological regulation||1||broad||P||regulation of motility||GO:0040012 regulation of locomotion||Y(kv); delete from entity list (c,d,r,k)||||Add as synonym of regulation of locomotion.
|-
|131227||cell||GO:0005623 cell||1||||C||cell-specific and inducible promoters|||||Y(kv); N (c,r,d,k)||||
|-
|131227||RhoGEF||GO:0005089 Rho guanyl-nucleotide exchange factor activity||6||exact||F||RhoGEF-2 isoform||||Y(kv), see notes above (c,r,d,k)||||
|-
|131227||locomotion||GO:GO:0040011 locomotion||2||||P||regulate locomotion rate||GO:0040012 regulation of locomotion||Y(kv,c,r,d,k)||||Add synonym?
|-
|131227||RhoGEF, see notes above (c,r,d,k)||GO:0005089 Rho guanyl-nucleotide exchange factor activity||7||exact||F||RhoGEF-2 mutants||||Y(kv)||||
|-
|131227||acetylcholinesterase||GO:0003990 acetylcholinesterase activity||1||||F||acetylcholinesterase inhibitor aldicarb||||Y(kv,c,r,d,k)||Link out to molecule, also?||
|-
|131227||acetylcholine receptor||GO:0015464 acetylcholine receptor activity||1||||F||acetylcholine receptor agonist levamisole||||Y(kv,c,r,d,k)||Link out to molecule, also?||
|-
|131227||signaling||GO:0023052 signaling||1||||P||acetylcholine neurotransmitter signaling||GO:0007271 synaptic transmission, cholinergic||||Y(kv); remove from entity list (c,d,r,k)||
|-
|131227||RhoGEF||GO:0005089 Rho guanyl-nucleotide exchange factor activity||8||exact||F||RhoGEF-2 mutants||||Y(kv), see notes above (c,r,d,k)||||
|-
|131227||motor||GO:0003774 motor activity||1||||F||motor neuron dense core vesicles (DCVs)||||N(kv); would be linked to wb motor neuron term||Eliminate link to motor if followed by neuron or neurons.||
|-
|131227||signaling||GO:0023052 signaling||2||||P||DCV-mediated signaling defects||GO:0007268 synaptic transmission||Y(kv); remove from entity list(c,r,d,k)||||
|-
|131227||RhoGEF||GO:0005089 Rho guanyl-nucleotide exchange factor activity||9||exact||F||RhoGEF-2 and rab-2 lethargic movement phenotypes||||Y(kv), see notes above(c,r,d,k)||||
|-
|131227||RhoGEF||GO:0005089 Rho guanyl-nucleotide exchange factor activity||10||exact||F||RhoGEF-2 isoforms||||Y(kv), see notes above(c,r,d,k)||||
|-
|131227||signaling||GO:0023052 signaling||3||||P||neurotransmitter signaling||GO:0007268 synaptic transmission||Y(kv); remove from entity list (c,r,d,k)||||Add synonym to GO?
|-
|131227||regulation of locomotion||GO:0040012 regulation of locomotion||2||||P||DCV-mediated neuromodulatory regulation of locomotion rate||||Y(kv,c,d,r,k)||||
|-
|}


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