View source for WebDev 2010.05.19-Agenda and Minutes

= Agenda =

== 1. Administration update (Todd; 5 minutes) ==

* almost all services now migrated to OICR
* servers giving good performance
* leaner architecture

== 2. modENCODE status (Xiaoqi; 10 minutes) ==

* slow software, try 2.08 version (LS)
* test in dev
* try MySQL optimization

== 3. Biomart progress (Abby; 10 minutes) ==

* Biomart WS210 building, slow
* Port 80 for the Biomart site -- problematic; works with 8080
* To discuss issues with folks @ OICR, esp. Joseph.

== 4. WS214 status & WS215 pipeline goals (Norie; 10 minutes) ==

== 5. API progress (Xiaoqi, Norie, Todd, 5 minutes) ==

== 6. Open table ==


==== Aligner and exact search problem in gbrowse2 (Abby) ====

Made changes to Bio::Graphics::Browser2::Region.pm
* wasn't searching through automatic classes for exact search - failing for Bio::DB::GFF.
* changed in dev, aligner and exact search work there

==== Search demo (Abby) ====
http://dev.wormbase.org:9010/  --home page

http://dev.wormbase.org:9010/search/gene/lin-5*  --multiple hit example



If there's time and/or you want explanations of code I added:

* Search box triggers action to Search controller:

http://bitbucket.org/tharris/wormbase/src/tip/lib/WormBase/Web/Controller/Search.pm

* Controller accesses Search object from API:

http://bitbucket.org/tharris/wormbase/src/tip/lib/WormBase/API.pm

http://bitbucket.org/tharris/wormbase/src/tip/lib/WormBase/API/Service/Search.pm

* Search object returns list of Search::Result objects:

http://bitbucket.org/tharris/wormbase/src/tip/lib/WormBase/API/Service/Search/Result.pm

* results.tt2 template renders the Search::Result objects:

http://bitbucket.org/tharris/wormbase/src/tip/root/templates/search/results.tt2