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WB conf call minutes Dec. 15, 2011


  • Sign off on WS230 models
  • Gff3 issue; Affects Caltech and Wash. U methods - both sites are aware

WB Staging server

  • Mimics the actions on the production site. Use this for testing purposes.

Protein model

  • Common name, tag - what to populate?
  • Uniprot ID instead of WP ID.

Uncaptured gene & protein synonyms

  • How to extract uncaptured gene and protein synonyms?
  • Use Textpresso pattern match?
  • Populate them under "other names"

WormBase help desk requests

  • User should be able to reset password. Web team working on this issue.
  • WormBase gazette - bibliography not on new site. Web team working on this issue.

Grant writing

  • 30 pages
  • Lot of thinking and planning before writing
  • No site visits for now

Textpresso REST web service

  • Todd will test and integrate in the future. For now, WormBase will link out to Textpresso page.

Genome browser search

  • Species name should be suppressed when searching. Todd/web team will look into it.