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• WormBase Model:Accession number
  [[WormBase Models]] == Model ==
  1 KB (141 words) - 10:05, 15 November 2011

Page text matches

• WBConfCall 2017.03.16-Agenda and Minutes
  === Datomic model for external links === * Some links for accession numbers are text fields, others point to the accession class
  3 KB (493 words) - 16:08, 16 March 2017
• Noctua - Upload of WB Manual Annotations
  ! number of annotations in WS280 ace file (353 annotations total) ! number of annotations in WS280 ace file (353 annotations total)
  10 KB (1,456 words) - 17:43, 9 November 2023
• WormBase-Caltech Weekly Calls July 2014
  === Construct model/annotation === ...d to add "Construct" under list of "Detection methods" in the ?Interaction model
  4 KB (622 words) - 16:47, 6 August 2014
• Movie
  ==Movie Data Model== ...FO -> "mov_dbinfo" this field contains the DB_INFO including the Accession number for linking out to the url.
  5 KB (814 words) - 18:48, 17 September 2018
• Gene Interaction
  ...ed ?Physical_interaction model has also been consolidated into this larger model. Note that #Interaction_info and #Interaction_type have been deprecated. WBProcess ?WBProcess XREF Interaction // WormBase biological process associated with the interaction
  53 KB (6,521 words) - 20:51, 7 March 2019
• FP curator comments for St.Louis and Sanger structure correction data type
  [[http://www.wormbase.org/wiki/index.php?title=How_to_FirstPass&action=submit back]] | 2050||cdNA for unc-51 was isolated and sequenced but accession number was not given. ||2/2/02 21:01
  40 KB (4,083 words) - 23:02, 13 August 2010
• SOP for generating GO files for citace and GO consortium uploads
  ...mberly/citace_upload/go so the next script can access the final annotation number) ...mberly/citace_upload/go so the next script can access the final annotation number)
  23 KB (3,744 words) - 15:12, 23 December 2022
• WS225
  New release of WormBase WS225, Wormpep225 and Wormrna225 Tue Apr 5 11:57:03 BST 2011 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data
  16 KB (1,674 words) - 11:38, 20 April 2011
• WormMine
  [http://intermine.wormbase.org/tools/wormmine/begin.do WormMine] [https://github.com/WormBase/intermine WormMine Github]
  15 KB (2,088 words) - 16:16, 15 October 2020
• WS289
  New release of WormBase WS288 WS288 was built by Stavros Diamantakis with the input from the WormBase Community and Team. Thank you!
  16 KB (1,733 words) - 21:55, 11 May 2023
• WS284
  New release of WormBase WS284 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES)
  17 KB (1,841 words) - 21:54, 11 May 2023
• User Guide for Curators
  **Papers to show - this allows you to set a limit on the number of papers that are returned for any given search. The default value is 10. ***the UniProtKB ID, either the ID in full or just the six-digit accession (e.g., UniProtKB:P46549 or P46549)
  11 KB (1,765 words) - 15:10, 18 February 2014
• WormBase-Caltech Weekly Calls October 2013
  === WormBase Ontology Browser (WOBr) === *URL suffixes/endings will act as the RNAi.org Accession number that will go into the respective Movie objects
  13 KB (1,983 words) - 16:40, 7 November 2013
• FAQs
  ...ww.wormbase.org/about/Frequently_asked_questions FAQ pages] on the new www.wormbase.org site. === How should I cite WormBase? ===
  67 KB (10,954 words) - 09:22, 19 February 2013
• Topic pages
  **process pages will dissect the chapters and link them to entities in WormBase, Model changes for WS243 - added Specialisation_of and Generalisation_of tags, rem
  20 KB (3,088 words) - 19:17, 13 August 2020
• Concise Descriptions
  http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?root=ensembl&view=log *Field 7: Accession Evidence ''con_accession'': This is a text field, values are separated by c
  47 KB (6,852 words) - 04:27, 8 December 2020
• UserGuide:Reivsed Nomenclature
  .../p><h2>Genomes, assemblies, clones and contigs</h2><p>Reference genomes in WormBase are given version names, for example <i>C. elegans</i> has the version name ...<b>AscSuum_1.0</b> and <b>ASU_2.0</b></p><p>The genomes of most species in WormBase are incompletely assembled, being left as various sizes of contig. Only <i>
  56 KB (9,520 words) - 11:51, 21 October 2015
• UserGuide:Revised Nomenclature
  .../p><h2>Genomes, assemblies, clones and contigs</h2><p>Reference genomes in WormBase are given version names, for example <i>C. elegans</i> has the version name ...<b>AscSuum_1.0</b> and <b>ASU_2.0</b></p><p>The genomes of most species in WormBase are incompletely assembled, being left as various sizes of contig. Only <i>
  56 KB (9,514 words) - 09:48, 23 October 2015
• Gene Ontology
  ===WormBase Uploads=== ...produced weekly to the WormBase .ace file for upload: [[UniProtKB gpad to WormBase .ace]]
  30 KB (3,904 words) - 18:45, 13 May 2020
• Pictures
  ==Picture Data Model== ...ta from the literature and individual laboratories and display them in the WormBase gene expression page.
  120 KB (19,719 words) - 16:44, 20 October 2023

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