Difference between revisions of "WormBase SAB Meeting"

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<font size="5" color="Blue">[[WormBase_Consortium]] Scientific Advisory Board Meeting
 
  
[[File:Caltechlogo.gif|frame|none]]California Institute of Technology, January 27-29, 2013
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= Meeting list =
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[[2018_Advisory_Board_Meeting | 2018 SAB Meeting]]
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__TOC__
 
  
===[[WormBase_Consortium#Scientific_Advisory_Board |Advisors list]]===
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[[2016_Advisory_Board_Meeting | 2016 SAB Meeting]]
==Sunday 27th Jan – Pre-Meeting (WormBase central)==
 
'''(Advisory Board not required to attend this session)'''
 
  
* WormBase ParaSite
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[[2014_Advisory_Board_Meeting | 2014 SAB Meeting]]
* Revive GFF3 production/testing
 
* Representation of multiple assemblies for a single species (on web-site and FTP site)
 
* Mechanism to stage/review changes to static content without immediately publishing it to live site
 
* Future web-site features
 
** Incremental updates
 
** Data that we produce that cannot currently be viewed on web-site
 
*** Comparative genomics (multiple alignments, gene trees)
 
  
==Monday 28th Jan ==
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[[2013_Advisory_Board_Meeting | 2013 SAB Meeting]]
 
 
=== 9:00 - 9:15 Overview ===
 
 
 
* Introduction: Where we are, grant status, etc - (Paul Sternberg; 15 min)
 
 
 
=== 9:15 - 10:30 Website / User interface ===
 
 
 
* Site introduction; usage; web team accomplishments; objectives and milestones. (Todd; 20 minutes)
 
* Tour of the new website (Abby; 20 minutes)   
 
* Intermine introduction, status, and goals (JD; 15 minutes)
 
 
 
=== 10:30 - 10:45 BREAK ===
 
 
 
=== 10:45 - 12:15 Sequence analysis and curation ===
 
 
 
* Coping with the deluge of nematode sequence data (Kevin; 20 mins)
 
* Sequence curation - current status and future plans (Paul; 15 mins)
 
* Transcriptomics data in WormBase
 
** RNASeq alignment and annotation pipeline (Gary W; 10 mins)
 
** SPELL (Wen; 10 mins)
 
* Annotation of Brugia malayi - a pilot study for future parasitologist community collaborations (Michael; 15-20 mins)
 
 
 
 
 
 
 
=== 12:15 - 13:30 LUNCH === 
 
Morgan Library (second floor of Kerckhoff)
 
 
 
===  13:30 - 16:15 Literature curation ===
 
 
 
* Literature curation workflow and tools (50)
 
* Towards Integrated Phenotype Curation (alleles, RNAi, transgenes, interactions, GO  (30)
 
* Gene expression and regulation: Transcriptional Networks (Xioadong, Daniela)
 
* Interactions (20)
 
* GO (20)
 
* Cell Function (10)
 
* Processes and pathways (20)
 
* Transcriptional Networks
 
* Human Relevance - Orthologies, Disease and Drugs
 
 
 
=== 16:15 - 16:30 BREAK ===
 
 
 
=== 16:30 - 17:30 Other topics ===
 
 
 
* Revisiting tools with respect to Community Annotation (40)
 
** Pathways [Karen]
 
** Concise descriptions [Kimberly, Ranjana]
 
** Gene models (Kevin; 5 mins)
 
* Plans for retirement of the Acedb (Kevin/Todd; 15 mins)
 
 
 
== Tuesday 29th Jan ==
 
 
 
===8:30 – 9:00 Advisors breakfast===
 
 
 
===9:30 – 12:00 Advisors summary report===
 
 
 
===12:00 – 13:00 LUNCH ===
 
 
 
===13:00 – 15:00 Post ABM Discussion===
 
 
 
 
 
 
 
= Prior Meetings =
 
  
 
[[2011_Advisory_Board_Meeting | 2011 SAB Meeting]]
 
[[2011_Advisory_Board_Meeting | 2011 SAB Meeting]]

Latest revision as of 12:39, 7 June 2018