WormBase Model:Expression cluster
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Curator Comments/Description
Model
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// ?Expression_cluster class
// For microarray data clustering results.
//
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?Expression_cluster Description ?Text // refers to Biological meaning of this cluster group
Algorithm Text // refers to the algorithm that was used to get this clustering result.
Reference ?Paper XREF Expression_cluster //reference of the experiment
Microarray_results ?Microarray_results Text #Evidence //refers to all experimental results included in the cluster.
SAGE_tag ?SAGE_tag Text #Evidence //this is for clustering results concluded from SAGE experiment
Gene ?Gene XREF Expression_cluster #Evidence //Igor: populated during build based on Microarray_results mapping. Wen: sometimes entered directly when no microarray spot IDs were provided by the authors.
Expr_pattern ?Expr_pattern XREF Expression_cluster #Evidence //Wen: for clustering results concluded from Localizome
Remark ?Text #Evidence //for any other comments
Anatomy_term ?Anatomy_term XREF Expression_cluster #Evidence //Describes microarray experiments involving expression profiling in a particular tissue or cell Igor Dec 06
Proposed Changes
unused tags
SAGE_tag - can be removed.
Expr_pattern - this is actually used by one paper regarding Localizome.
