Difference between revisions of "WormBase-Caltech Weekly Calls"

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== August 15, 2019 ==
 
== August 15, 2019 ==
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=== GO Alliance slim terms ===
 +
* We need to update our GO slim terms for WB GO ribbons to be in sync with Alliance
 +
* May need to watch out for terms that don't apply to worms
 +
* Raymond gets slim terms into Solr from OBO release file; Sibyl collecting from different source; should make the same (pull from WB FTP site?)
  
 
=== Phenotype ontology patternization ===
 
=== Phenotype ontology patternization ===
 
* Now have 676 terms patternized (27% of 2,506 terms total)
 
* Now have 676 terms patternized (27% of 2,506 terms total)
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* Have reviewed the class hierarchy, collecting list of unexpected class subsumptions
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* Issues to address collected here: https://docs.google.com/document/d/1IWtQbEQ-elM-U5SQyU4VfIH3vdJp6taVMGViIjGyVks/edit?usp=sharing

Revision as of 16:25, 15 August 2019

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings

2016 Meetings

2017 Meetings

2018 Meetings


GoToMeeting link: https://www.gotomeet.me/wormbase1


2019 Meetings

January

February

March

April

May

June

July


August 1, 2019

Life stage public names missing in WS271

  • Did we ever get a patch in for this?
  • WormMine only has WBls IDs (no public name) for almost all life stages
  • Wen will resend the patch file

2020 WB NAR paper

  • Who's contributing?
    • Raymond, Chris, Ranjana, Valerio, Daniela, Kimberly
  • Topics
    • Automated descriptions
    • Ontology tools (SObA)
    • Community curation
    • Author first pass

2019 IWM Workshop videos

  • On YouTube, but not public yet
  • Chris will make them public and send links to Ranjana for the blog post


August 15, 2019

GO Alliance slim terms

  • We need to update our GO slim terms for WB GO ribbons to be in sync with Alliance
  • May need to watch out for terms that don't apply to worms
  • Raymond gets slim terms into Solr from OBO release file; Sibyl collecting from different source; should make the same (pull from WB FTP site?)

Phenotype ontology patternization