Difference between revisions of "WBConfCall 2019.07.18-Agenda and Minutes"
From WormBaseWiki
Jump to navigationJump to search(7 intermediate revisions by 3 users not shown) | |||
Line 2: | Line 2: | ||
=== Apologies for absence === | === Apologies for absence === | ||
+ | Paul Davis | ||
=== WS273 === | === WS273 === | ||
− | * | + | * local citace upload -data freeze Tuesday, July 23rd |
+ | * Citace to Hinxton on Friday | ||
* [https://github.com/WormBase/wormbase-pipeline/releases/tag/models.wrm.WS273 WS273 models.wrm] file - correct version of the pre-production models file | * [https://github.com/WormBase/wormbase-pipeline/releases/tag/models.wrm.WS273 WS273 models.wrm] file - correct version of the pre-production models file | ||
+ | === Sequence curation for phenotypic alleles in papers === | ||
+ | |||
+ | * Email from Oliver Hobert : some published alleles are falling through the cracks for curation; paper mentioned is missing sequence and phenotype | ||
+ | * Requires re-organization of curation priorities | ||
+ | ** current priority based on 1. what people complain about and 2. Data entered through the seq change form | ||
+ | ** need to wait until Paul D. is back | ||
+ | ** Need to figure out backlog - | ||
+ | *** from curation status form - 225/489 positive and not curated, feedback from Hinxton nameserver - not necessarily if sequence was capture | ||
+ | *** svm for sequence change - need to check criteria | ||
+ | *** textpresso flagging script highlighted potential *new alleles* - script stopped about ~1 year ago, output would be automatically added to Hinxton ticket server | ||
+ | *** micropublication will request authors submit sequence through the forms | ||
+ | |||
+ | ** strains in CGC are listed as not available at CGC - need to talk to Paul D. | ||
+ | [action] Kevin will discuss this with Paul D. on Monday and we will discuss topic at the next site-wide meeting | ||
=== Author First Pass === | === Author First Pass === | ||
− | + | [added by Valerio] <br> | |
We would like to link the page that lists all papers processed by the new AFP of a specific author (http://textpressocentral.org:5002) to the main WB website under the 'community' menu and, for logged-in users, as a widget in the person page (as an empty widget with only the link). | We would like to link the page that lists all papers processed by the new AFP of a specific author (http://textpressocentral.org:5002) to the main WB website under the 'community' menu and, for logged-in users, as a widget in the person page (as an empty widget with only the link). | ||
+ | * Wants link to only be visible to WB users that are logged in to WB. Prefers link in its own widget. | ||
+ | |||
This is a screenshot of the page: | This is a screenshot of the page: | ||
[[File:your_afp_papers.png|1000px]] | [[File:your_afp_papers.png|1000px]] | ||
+ | === 2020 NAR Manuscript === | ||
+ | [Added by Todd] | ||
+ | |||
+ | The 2019 NAR submission (for the 2020 issue) is due September 15th. If you have submissions to the manuscript, please submit them here: | ||
+ | |||
+ | https://docs.google.com/document/d/1TlY2D0DfXOVmZdLwP2V-1n-E8Uo4u3F2cn9-w2JeFq0 | ||
+ | |||
+ | *I plan to submit the manuscript by mid August.* | ||
+ | Paul S recommends Todd send out reminders | ||
=== Other issues=== | === Other issues=== |
Revision as of 16:13, 18 July 2019
Contents
Agenda
Apologies for absence
Paul Davis
WS273
- local citace upload -data freeze Tuesday, July 23rd
- Citace to Hinxton on Friday
- WS273 models.wrm file - correct version of the pre-production models file
Sequence curation for phenotypic alleles in papers
- Email from Oliver Hobert : some published alleles are falling through the cracks for curation; paper mentioned is missing sequence and phenotype
- Requires re-organization of curation priorities
- current priority based on 1. what people complain about and 2. Data entered through the seq change form
- need to wait until Paul D. is back
- Need to figure out backlog -
- from curation status form - 225/489 positive and not curated, feedback from Hinxton nameserver - not necessarily if sequence was capture
- svm for sequence change - need to check criteria
- textpresso flagging script highlighted potential *new alleles* - script stopped about ~1 year ago, output would be automatically added to Hinxton ticket server
- micropublication will request authors submit sequence through the forms
- strains in CGC are listed as not available at CGC - need to talk to Paul D.
[action] Kevin will discuss this with Paul D. on Monday and we will discuss topic at the next site-wide meeting
Author First Pass
[added by Valerio]
We would like to link the page that lists all papers processed by the new AFP of a specific author (http://textpressocentral.org:5002) to the main WB website under the 'community' menu and, for logged-in users, as a widget in the person page (as an empty widget with only the link).
- Wants link to only be visible to WB users that are logged in to WB. Prefers link in its own widget.
This is a screenshot of the page:
2020 NAR Manuscript
[Added by Todd]
The 2019 NAR submission (for the 2020 issue) is due September 15th. If you have submissions to the manuscript, please submit them here:
https://docs.google.com/document/d/1TlY2D0DfXOVmZdLwP2V-1n-E8Uo4u3F2cn9-w2JeFq0
- I plan to submit the manuscript by mid August.*
Paul S recommends Todd send out reminders