https://wiki.wormbase.org/index.php?title=Local_installation_of_WormBase&feed=atom&action=historyLocal installation of WormBase - Revision history2024-03-29T10:19:33ZRevision history for this page on the wikiMediaWiki 1.33.0https://wiki.wormbase.org/index.php?title=Local_installation_of_WormBase&diff=6016&oldid=prevCgrove at 17:30, 16 August 20102010-08-16T17:30:43Z<p></p>
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</table>Cgrovehttps://wiki.wormbase.org/index.php?title=Local_installation_of_WormBase&diff=2939&oldid=prevSchwarz at 20:53, 24 September 20092009-09-24T20:53:18Z<p></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 20:53, 24 September 2009</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Or perhaps you would like to set up a mirror site of WormBase as a community resource.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Or perhaps you would like to set up a mirror site of WormBase as a community resource.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">We offer two approaches for installing and running your own copy of WormBase</del>.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">== 1</ins>. <ins class="diffchange diffchange-inline">Manual installation ==</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">== 1</del>. <del class="diffchange diffchange-inline">Use "Virtual Machines" </del>of WormBase <del class="diffchange diffchange-inline">==</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">As of September 2009, the supported method is to [http://www.wormbase.org/wiki/index</ins>.<ins class="diffchange diffchange-inline">php/WormBase_Development_Environment install all components </ins>of WormBase <ins class="diffchange diffchange-inline">individually]. It requires that one be familiar with Unix/Linux and have access to a server-class machine. This requires significant time and effort upfront, and some time every few weeks to keep things up-to-date.</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>"Virtual Machines" <del class="diffchange diffchange-inline">(or VMX) are self-contained packages </del>of <del class="diffchange diffchange-inline">everything you need to use </del>WormBase <del class="diffchange diffchange-inline">locally. By everything, we mean everything: all the software, third party libraries, databases and datasets, and even an operating system (in our case, CentOS Linux).</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">== 2. Use </ins>"Virtual Machines" of WormBase <ins class="diffchange diffchange-inline">==</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Virtual machines can be opened on Mac, Windows, and Linux platforms using the free VMPlayer (Linux, Windows) or the VMWare Fusion Player (Mac) available from VMWare.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">A former, but no longer supported method, of running a WormBase mirror is to download and run it as a virtual machine. Virtual machines (or VMX) are self-contained packages of everything you need to use WormBase locally. By everything, we mean everything: all the software, third party libraries, databases and datasets, and even an operating system (in our case, CentOS Linux). </ins>Virtual machines can be opened on Mac, Windows, and Linux platforms using the free VMPlayer (Linux, Windows) or the VMWare Fusion Player (Mac) available from VMWare. In essence, <ins class="diffchange diffchange-inline">one runs </ins>a complete operating system complete with WormBase INSIDE <ins class="diffchange diffchange-inline">the main </ins>operating system.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>In essence, <del class="diffchange diffchange-inline">you'll be running </del>a complete operating system complete with WormBase INSIDE <del class="diffchange diffchange-inline">your </del>operating system.</div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Virtual_Machines|Read more about how to use and where to get WormBase Virtual Machines.]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Virtual_Machines|Read more about how to use and where to get WormBase Virtual Machines.]]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">== 2. Manual installation ==</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">If you are familiar with Unix/Linux and have access to a server-class machine, you might want to [[How_To_Build_A_WormBase_Mirror|install all components of WormBase individually]]. This approach acquires more time and effort upfront, and some time every few weeks to keep things up-to-date. The pre-built virtual machines are much easier to use but we offer this manual approach for those who would like to build a custom installation.</del></div></td><td colspan="2"> </td></tr>
</table>Schwarzhttps://wiki.wormbase.org/index.php?title=Local_installation_of_WormBase&diff=103&oldid=prevTharris: New page: Imagine being able to run WormBase on your own local computer, unencumbered from server load at www.wormbase.org, network latency, or even the need for a network connection. Run BLAST sear...2007-09-24T02:16:55Z<p>New page: Imagine being able to run WormBase on your own local computer, unencumbered from server load at www.wormbase.org, network latency, or even the need for a network connection. Run BLAST sear...</p>
<p><b>New page</b></p><div>Imagine being able to run WormBase on your own local computer, unencumbered from server load at www.wormbase.org, network latency, or even the need for a network connection. Run BLAST searches on your laptop enroute to your next presentation somehwere over the Atlantic or explore expression patterns of your favorite gene family at your local coffee shop.<br />
<br />
Maybe you have a private dataset that you would like to incorporate with WormBase but share within your lab or organization.<br />
<br />
Or perhaps you would like to set up a mirror site of WormBase as a community resource.<br />
<br />
We offer two approaches for installing and running your own copy of WormBase.<br />
<br />
== 1. Use "Virtual Machines" of WormBase ==<br />
<br />
"Virtual Machines" (or VMX) are self-contained packages of everything you need to use WormBase locally. By everything, we mean everything: all the software, third party libraries, databases and datasets, and even an operating system (in our case, CentOS Linux).<br />
<br />
Virtual machines can be opened on Mac, Windows, and Linux platforms using the free VMPlayer (Linux, Windows) or the VMWare Fusion Player (Mac) available from VMWare.<br />
<br />
In essence, you'll be running a complete operating system complete with WormBase INSIDE your operating system.<br />
<br />
[[Virtual_Machines|Read more about how to use and where to get WormBase Virtual Machines.]]<br />
<br />
== 2. Manual installation ==<br />
<br />
If you are familiar with Unix/Linux and have access to a server-class machine, you might want to [[How_To_Build_A_WormBase_Mirror|install all components of WormBase individually]]. This approach acquires more time and effort upfront, and some time every few weeks to keep things up-to-date. The pre-built virtual machines are much easier to use but we offer this manual approach for those who would like to build a custom installation.</div>Tharris