Difference between revisions of "Caltech documentation"

From WormBaseWiki
Jump to navigationJump to search
(14 intermediate revisions by 4 users not shown)
Line 1: Line 1:
[[User Guide 2010:TOC | Table of Contents]]
+
 
  
 
==First-pass flagging==
 
==First-pass flagging==
Line 23: Line 23:
 
*[[Antibody]]
 
*[[Antibody]]
 
*[[Concise Descriptions]]
 
*[[Concise Descriptions]]
 +
*[[Construct]]
 
*[[Expression Pattern]]
 
*[[Expression Pattern]]
 
*[[Gene Class Descriptions]]
 
*[[Gene Class Descriptions]]
Line 29: Line 30:
 
*[[Gene-Paper Associations]]
 
*[[Gene-Paper Associations]]
 
*[[Gene Regulation]]
 
*[[Gene Regulation]]
 +
*[[Genotype]]
 
*[[Life_Stage]]
 
*[[Life_Stage]]
 
*[[Molecule]]
 
*[[Molecule]]
Line 36: Line 38:
 
*[[Physical Interactions]]
 
*[[Physical Interactions]]
 
*[[Pictures]]
 
*[[Pictures]]
 +
*[[Relations Ontology]]
 
*[[RNAi]]
 
*[[RNAi]]
 
*[[Sequence Feature]]
 
*[[Sequence Feature]]
 +
*[[Strain]]
 
*[[Topic_pages]]
 
*[[Topic_pages]]
 
*[[Transgenes]]
 
*[[Transgenes]]
 
*[[Disease and Drugs]]
 
*[[Disease and Drugs]]
 
*[[Drugs]]
 
*[[Drugs]]
 +
*[[VariationConciseDescriptions | Variation Concise Descriptions]]
 
</div>
 
</div>
  
Line 47: Line 52:
 
*[[WormBase Paper Categorization]]
 
*[[WormBase Paper Categorization]]
  
==Biological Topic Curation==
+
==Paper ID Conversion CGI==
*[[Topic_Curation|Topic Curation]]
+
*[[Paper_ID_conversion_CGI]]
*[[WikiPathways Questions & Comments]]
+
 
 +
==Working Group==
 +
*[[Phenotype Ontology Development]]
 +
*[[Community Curation]]
 +
*[[LEGO Curation]]
  
 
==Curation Progress==
 
==Curation Progress==
Line 91: Line 100:
 
* [http://wiki.wormbase.org/index.php/Genetics_Markup_by_Textpresso_and_First_Pass GSA Markup Workflow]
 
* [http://wiki.wormbase.org/index.php/Genetics_Markup_by_Textpresso_and_First_Pass GSA Markup Workflow]
 
* [[GSA Markup SOP]]
 
* [[GSA Markup SOP]]
* [[GSA linking pipeline]]
+
* [[GSA linking pipeline | Pipeline image]]
 +
* [[Linking_script_pipeline | Linking scripts]]
 
* [[Entity classes and problems]]  
 
* [[Entity classes and problems]]  
** [[Papers that have been markedup]]
+
** [[Example marked up papers]]
 
** [[Markup excerpts]]
 
** [[Markup excerpts]]
 
*[[Future Entities for markup]]
 
*[[Future Entities for markup]]
Line 104: Line 114:
 
==Interesting, Not-yet-modelled Data Index==
 
==Interesting, Not-yet-modelled Data Index==
 
[[INDI]]
 
[[INDI]]
 +
 +
 +
==Requested details for the Citace upload report==
 +
[[Citace_upload_report]]
  
 
==Release note requests from Caltech==
 
==Release note requests from Caltech==
 
[[Release note requests]]
 
[[Release note requests]]

Revision as of 20:29, 27 June 2018


First-pass flagging

Automation and Text Mining Approaches

Citace

Datatype

Paper Categorization

Paper ID Conversion CGI

Working Group

Curation Progress

postgres

Caltech weekly meetings

Conference Calls

Phenote

Ontology Annotator

Textpresso

SVMs for First Pass Curation

GSA markup

User Guide 2010

Table of Contents

Interesting, Not-yet-modelled Data Index

INDI


Requested details for the Citace upload report

Citace_upload_report

Release note requests from Caltech

Release note requests