Difference between revisions of "2018 Advisory Board Meeting"
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* OICR | * OICR | ||
** Lincoln Stein, Todd Harris, Adam Wright, Paulo Nuin, Sibyl Gao | ** Lincoln Stein, Todd Harris, Adam Wright, Paulo Nuin, Sibyl Gao | ||
+ | |||
+ | = Presentation slides, drafts, etc = | ||
+ | ** https://drive.google.com/drive/folders/161gEkCTxIAy22iVm1gRWmhYu_yhavMf6 | ||
+ | ** Login with WormBase account to edit. | ||
= Project meeting = | = Project meeting = | ||
Line 24: | Line 28: | ||
* Kevin Howe | * Kevin Howe | ||
− | * Michael Paulini | + | * Michael Paulini - ''parasitic core species'' |
− | * Paul Davis | + | * Paul Davis - CGC, Variants and Strains |
* Gary Williams | * Gary Williams | ||
* Matt Russell | * Matt Russell | ||
* Faye Rodgers | * Faye Rodgers | ||
− | * Chris Grove | + | * Chris Grove - phenotype curation & community phenotype curation, interactions (genetic & physical) |
− | * Kimberly Van Auken | + | * Kimberly Van Auken - gene function annotation using GO |
* Raymond Lee | * Raymond Lee | ||
− | * Karen Yook | + | * Karen Yook ''??making more use of microPublication??'' |
* Wen Chen | * Wen Chen | ||
− | * April Jauhal | + | * April Jauhal -- gene regulation interactions |
− | * Ranjana Kishore | + | * Ranjana Kishore - Automated gene descriptions and disease models |
* Juancarlos Chan | * Juancarlos Chan | ||
− | + | • Paul Sternberg ''Transcriptional Regulation, what we need to do'' | |
* Todd Harris -- ''website status; use and users; associated costs and management; third party projects we support'' | * Todd Harris -- ''website status; use and users; associated costs and management; third party projects we support'' | ||
* Adam Wright | * Adam Wright | ||
* Paulo Nuin | * Paulo Nuin | ||
− | * Sibyl Gao | + | * Sibyl Gao -- Technology stack modernization for UI and search, Name server UI |
topics | topics | ||
Line 75: | Line 79: | ||
0830 introduction and overview -Paul Sternberg | 0830 introduction and overview -Paul Sternberg | ||
− | Overview of Project, Funding, The Alliance, Big Picture, Issues | + | Overview of Project, Funding, The Alliance, Big Picture, Issues, Outreach, |
− | 0900 dataflow and backend: status and plans | + | 0900 dataflow and backend: status and plans -Kevin Howe |
+ | Status | ||
− | 0945 curation: status and plans | + | 0945 curation: status and plans -Chris Grove |
+ | Prioritization of datatypes | ||
+ | How this is impacted by Alliance | ||
1030 break | 1030 break | ||
− | 1100 website: status and plans | + | 1100 website: status and plans - Todd Harris |
+ | DevOps | ||
+ | Tools | ||
+ | Running on datomic | ||
1130 tools and displays;status and plans | 1130 tools and displays;status and plans | ||
+ | WormMine - | ||
+ | Ontology Browsing -Raymond | ||
+ | ParaSite - Kevin Howe | ||
1200 lunch | 1200 lunch |
Revision as of 18:27, 21 June 2018
The 2018 edition of the WormBase project meeting / Scientific Advisory Board meeting will take place at OICR on 12/13 July 2018.
Contents
Logistics
Attending
- Hinxton
- Matt Berriman, Kevin Howe, Michael Paulini, Paul Davis, Gary Williams, Matt Russell, Faye Rodgers
- Caltech
- Chris Grove, Kimberly Van Auken, Raymond Lee, Karen Yook, Paul Sternberg, Wen Chen, April Jauhal, Ranjana Kishore, Juancarlos Chan
- OICR
- Lincoln Stein, Todd Harris, Adam Wright, Paulo Nuin, Sibyl Gao
Presentation slides, drafts, etc
- https://drive.google.com/drive/folders/161gEkCTxIAy22iVm1gRWmhYu_yhavMf6
- Login with WormBase account to edit.
Project meeting
Agenda
Short talks from Everyone --5 minutes pe peson with 5 mintues discussion 10 x 24 = 4 hours
It would be a good idea if wrote down below the general theme of what we will each be talking about, so that we can group the talks into themes. This might fall-out as per-site groupings, but some things (e.g. back-end migration) are cross-site and would benefit from being grouped together.
- Kevin Howe
- Michael Paulini - parasitic core species
- Paul Davis - CGC, Variants and Strains
- Gary Williams
- Matt Russell
- Faye Rodgers
- Chris Grove - phenotype curation & community phenotype curation, interactions (genetic & physical)
- Kimberly Van Auken - gene function annotation using GO
- Raymond Lee
- Karen Yook ??making more use of microPublication??
- Wen Chen
- April Jauhal -- gene regulation interactions
- Ranjana Kishore - Automated gene descriptions and disease models
- Juancarlos Chan
• Paul Sternberg Transcriptional Regulation, what we need to do
- Todd Harris -- website status; use and users; associated costs and management; third party projects we support
- Adam Wright
- Paulo Nuin
- Sibyl Gao -- Technology stack modernization for UI and search, Name server UI
topics Backend: datomic migration, curation, Alliance plans
WormMine etc.
Thursday dinner for staff and SAB member
Evening, Thursday July 12
SAB
Advisors
attending
- Valerie Wood - PomBase
- Mary Shimoyama - RGD
- Ann Rougvie
- Brian Oliver
- Gary Bader
- Brent Derry
- Mei Zhen
regrets
- Oliver Hobert
- Julie Ahringer
- Andrew Chisholm
- Mike Cherry
- John Calarco
Agenda
0800 coffee???
0830 introduction and overview -Paul Sternberg
Overview of Project, Funding, The Alliance, Big Picture, Issues, Outreach,
0900 dataflow and backend: status and plans -Kevin Howe
Status
0945 curation: status and plans -Chris Grove
Prioritization of datatypes How this is impacted by Alliance
1030 break
1100 website: status and plans - Todd Harris
DevOps Tools Running on datomic
1130 tools and displays;status and plans
WormMine - Ontology Browsing -Raymond ParaSite - Kevin Howe
1200 lunch
1300 SAB discussion
1430 Feedback, and Discussion
1630 conclude
Dinner for those who are not departing immediately
Evening, Friday, July 13