WS228 Models.wrm

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Models Tagged for WS228

This cycle we see 4 simple changes/additions and the re-working of the Expression_cluster class.

Model Changes

Additions:


?Gene
-----
Regulate_expr_cluster ?Expression_cluster XREF Regulated_by_gene
?Microarray_experiment
----------------------
Expression_cluster ?Expression_cluster XREF Microarray_experiment
#Homology_type
--------------
COG   //eggNOG - COG cluster
?Variation
----------
Readthrough Text #Evidence
#Molecular_change
-----------------
Readthrough Text #Evidence
?Analysis
---------
Expression_cluster ?Expression_cluster XREF Analysis
?Molecule
---------
Regulate_expr_cluster ?Expression_cluster XREF Regulated_by_molecule


Changes:


?CDS
----
Start_not_found Int
Start_not_found UNIQUE Int
?Transcript
-----------
u21RNA UNIQUE Text	
piRNA UNIQUE Text


Reworked:


Mainly additions with the introduction of some top level tags.

		    Based_on_WB_Release     Int                             //Wen - to identify clusters not mapped if authors did not provide probe information. 
		    Attribute_of Microarray_experiment ?Microarray_experiment  XREF Expression_cluster //Wen
				 Analysis ?Analysis XREF Expression_cluster //Wen, for cluster obtained from RNAseq or Tiling array
                    Regulation   Regulated_by_gene ?Gene		     //Wen WS228
                                 Regulated_by_treatment Text                //Wen WS228
                                 Regulated_by_molecule ?Molecule            //Wen WS228
                    Associated_with  Life_stage ?Life_stage                 //Wen WS228
                                     GO_term ?GO_term                       //Wen WS228